1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gttatttcattggaaccttgcttttttagactacggagtgaaaaatcataattgcaacatcacgtttttttgtttgttctctatttattcttgacttttttgtcccacagATTACCCATACACTTTCTGTTTCTCTTAACAAAATTGGAGATCTTAAATATTACGATGGAGACCTTCAAGCTGCAAGATCTTACTATTTTAAATCTTTGA
species | Glycine max |
transcript | GLYMA04G15130.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTGAAGAAAGTGTTCAATTTCTGTCGAAGTTGCCAAAAGATGATTTGGAG ATTACCCATACACTTTCTGTTTCTCTTAACAAAATTGGAGATCTTAAATATEST: gi|120530995|gb|EH259128.1|EH259128
genomic: TTGAAGAAAGTGTTCAATTTCTGTCGAAGTTGCCAAAAGATGATTTGGAGgttatttcat ... tgtcccacagATTACCCATACACTTTCTGTTTCTCTTAACAAAATTGGAGATCTTAAATAT
EST: TTGAAGAAAGTGTTCAATTTCTGTCGAAGTTGCCAAAAGATGATTTGGAG ATTACCCATACACTTTCTGTTTCTCTTAACAAAATTGGAGATCTTAAATATEST: gi|58017733|gb|CX704475.1|CX704475
genomic: TTGAAGAAAGTGTTCAATTTCTGTCGAAGTTGCCAAAAGATGATTTGGAGgttatttcat ... tgtcccacagATTACCCATACACTTTCTGTTTCTCTTAACAAAATTGGAGATCTTAAATAT
EST: TTGAAGAAAGTGTTCAATTTCTGTCGAAGTTGCCAAAAGATGATTTGGAG A-TACCCCATACACTTTCTGTTTCTCTTAACAAAATTGGAGATCTTAAATAEST: gi|58014381|gb|CX701123.1|CX701123
genomic: TTGAAGAAAGTGTTCAATTTCTGTCGAAGTTGCCAAAAGATGATTTGGAGgttatttcat ... tgtcccacagATTA-CCCATACACTTTCTGTTTCTCTTAACAAAATTGGAGATCTTAAATA
EST: TTGAAGAAAGTGTTCAATTTCTGTCGAAGTTGCCAAAAGATGATTTGGAG ATTACCCATACACTTTCTGTTTCTCTTAACAAAATTGGAGATCTTAAATAT
genomic: TTGAAGAAAGTGTTCAATTTCTGTCGAAGTTGCCAAAAGATGATTTGGAGgttatttcat ... tgtcccacagATTACCCATACACTTTCTGTTTCTCTTAACAAAATTGGAGATCTTAAATAT
aacatcacgtttttttgtttgttctctatttattcttgacttttttgtcccacagATTACCCATACACTTTCTGTTTCTCTTAACAAAATTGGAGATCTTAAATATTACGATGGAGACCTTCAAGCTGCAAGATCTTACTATTTTAAATCTTTGA
tcttgac putative branch site (score: 3)
ttcttgactttttt CT-rich tract
tttttttgtttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttatttcattggaaccttgcttttttagactacggagtgaaaaatcataattgcaacatcacgtttttttgtttgttctctatttattcttgacttttttgtcccacagATTACCCATACACTTTCTGTTTCTCTTAACAAAATTGGAGATCTTAAATATTACGATGGAGACCTTCAAGCTGCAAGATCTTACTATTTTAAATCTTTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA