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...tgaagttattgatgcagttttttttttcttttttaataatataataaatgctgatacagatcctacatgtgcattaactcatatttgttagaaaatgtagGAATCAGGTGCAAATTTCTTGTTTCCATCACCTATAGCCTCCACCAATGATATTGTTGTTGTCTGGGATCCAGAAGTGGGAAAGATAAATCCCTCTGAGC
species | Glycine max |
transcript | GLYMA04G10090.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGTACCTGGTTGTGGACTTCTGTAGTTTTGAGCATCGAGTTGTTTTTCAG GAATCAG-TGCAAATTTCTTGTTTC-ATCAC-TATAGC-TC-AC-AATGATEST: gi|207795704|gb|GD766463.1|GD766463
genomic: TGTACCTGGTTGTGGACTTCTGTAGTTTTGAGCATCGAGTTGTTTTTCAGgtattcttgc ... gaaaatgtagGAATCAGGTGCAAATTTCTTGTTTCCATCACCTATAGCCTCCACCAATGAT
EST: TGTACCTGGTTGTGGACTTCTGTAGTTTTGAGCATCGAGTTGTTTTTCAG GAATCAGGTGCAAATTTCTTGTTEST: gi|209713245|gb|BW681784.1|BW681784
genomic: TGTACCTGGTTGTGGACTTCTGTAGTTTTGAGCATCGAGTTGTTTTTCAGgtattcttgc ... gaaaatgtagGAATCAGGTGCAAATTTCTTGTT
EST: TGTACCTGGTTGTGGACTTCTGTAGTTTTGAGCATCGAGTTGTTTTTCAG GAATCAGGTGCAAATTTCTTGTTTCCATCACCTATAGCCTCCACCAATGAT
genomic: TGTACCTGGTTGTGGACTTCTGTAGTTTTGAGCATCGAGTTGTTTTTCAGgtattcttgc ... gaaaatgtagGAATCAGGTGCAAATTTCTTGTTTCCATCACCTATAGCCTCCACCAATGAT
aaatgctgatacagatcctacatgtgcattaactcatatttgttagaaaatgtagGAATCAGGTGCAAATTTCTTGTTTCCATCACCTATAGCCTCCACCAATGATATTGTTGTTGTCTGGGATCCAGAAGTGGGAAAGATAAATCCCTCTGAGC
cattaac putative branch site (score: 2)
atatttgttagaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgaagttattgatgcagttttttttttcttttttaataatataataaatgctgatacagatcctacatgtgcattaactcatatttgttagaaaatgtagGAATCAGGTGCAAATTTCTTGTTTCCATCACCTATAGCCTCCACCAATGATATTGTTGTTGTCTGGGATCCAGAAGTGGGAAAGATAAATCCCTCTGAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - -tgatgca
- - - - - - - - - - - - - - - - - - - - - - - - tgctgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcctaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcatta