1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...tacttttcattttatttgttttttcctgttggtctttcaacctgagttgcacgtatttatccattgtcttcaccagtatattgtatccaatattacacagGGTGGTTATAGAGGCTTTTATTCCAAAAACACCATTACTTTAACACCTAAGGTGGTCAATGACATCCATAAGCGTGGGGGTACAATTCTTGGGACATCCC
species | Glycine max |
transcript | GLYMA04G09180.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TCTGTGGTCTTTCCTACATGTACGGTGTTAACAAAGTCCTTGGCATAGAT GGTGGTTATAGAGGCTTTTATTEST: gi|254339206|gb|GR847923.1|GR847923
genomic: TCTGTGGTCTTTCCTACATGTACGGTGTTAACAAAGTCCTTGGCATAGATgtgagtgggt ... tattacacagGGTGGTTATAGAGGCTTTTATT
EST: TCTGTGGTCTTTCCTACATGTATGGTGTTAACAAAGTCCTTGGCATAGAT GGTGGTTATAGAGGCTTTTATTCCAAAAACACCATTACTTTAACACCTAAGEST: gi|213590226|gb|DB963817.1|DB963817
genomic: TCTGTGGTCTTTCCTACATGTACGGTGTTAACAAAGTCCTTGGCATAGATgtgagtgggt ... tattacacagGGTGGTTATAGAGGCTTTTATTCCAAAAACACCATTACTTTAACACCTAAG
EST: TCTGTGGTCTTTCCTACATGTACGGTGTTAACAAAGTCCTTGGCATAGAT GGTGGTTATAGAGGCTTTTATTCCAAAAACACCATTACTTTAACACCTAAG
genomic: TCTGTGGTCTTTCCTACATGTACGGTGTTAACAAAGTCCTTGGCATAGATgtgagtgggt ... tattacacagGGTGGTTATAGAGGCTTTTATTCCAAAAACACCATTACTTTAACACCTAAG
gttgcacgtatttatccattgtcttcaccagtatattgtatccaatattacacagGGTGGTTATAGAGGCTTTTATTCCAAAAACACCATTACTTTAACACCTAAGGTGGTCAATGACATCCATAAGCGTGGGGGTACAATTCTTGGGACATCCC
tatattgtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tacttttcattttatttgttttttcctgttggtctttcaacctgagttgcacgtatttatccattgtcttcaccagtatattgtatccaatattacacagGGTGGTTATAGAGGCTTTTATTCCAAAAACACCATTACTTTAACACCTAAGGTGGTCAATGACATCCATAAGCGTGGGGGTACAATTCTTGGGACATCCC
- - - - - - - - - - - - cctgttg
- - - - - - - - - - - - - - - - - - -caacctg
- - - - - - - - - - - - - - - - - - - - - - - -tgcacgt