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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagtgctttgtccttgatatttttctccttcttatcctcctttttaactgatgttaatttgatgatcccaccttaacatttttttactgcacttgtctgctcagCGGACTATATACTTGCCAACACCAACTTGGGGTAATCACCCAAAGGTTTTCAACTTAGCAGGGTTGTCTGTCAAAACATATCGCTACTATGCTCCAGCAA

Basic information

species Glycine max
transcript GLYMA04G08560.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151412423|gb|EV282235.1|EV282235
EST:     CTGGTTCATTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAA                         CGGACTATATACTTGCCAACACCAACTTGGGGTAATCACCCAAAGGTTTTC
genomic: CTGGTTCATTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAAgtaaagtgct ... gtctgctcagCGGACTATATACTTGCCAACACCAACTTGGGGTAATCACCCAAAGGTTTTC
EST: gi|192306580|gb|FG996242.1|FG996242
EST:     CTGGTTCATTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAA                         CGGACTATATACTTGCCAACACCAACTTGGGGTAATCACCCAAAGGTTTTC
genomic: CTGGTTCATTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAAgtaaagtgct ... gtctgctcagCGGACTATATACTTGCCAACACCAACTTGGGGTAATCACCCAAAGGTTTTC
EST: gi|254321007|gb|GR827456.1|GR827456
EST:     CTGGTTCATTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAA                         CGGACTATATACTTGCCAACACCAACTTGGGGTAATCACCCAAAGGTTTTC
genomic: CTGGTTCATTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAAgtaaagtgct ... gtctgctcagCGGACTATATACTTGCCAACACCAACTTGGGGTAATCACCCAAAGGTTTTC
EST: gi|17022645|gb|BM093679.1|BM093679
EST:     CTGGTTCATTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAA                         CGGACTATATACTTGCCAACACCAACTTGGGGTAATCACCCAAAGGTTTTC
genomic: CTGGTTCATTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAAgtaaagtgct ... gtctgctcagCGGACTATATACTTGCCAACACCAACTTGGGGTAATCACCCAAAGGTTTTC
EST: gi|192334119|gb|FK026276.1|FK026276
EST:     CTGGTTCATTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAA                         CGGACTATATACTTGCCAACACCAACTTGGGGTAATCACCCAAAGGTTTTC
genomic: CTGGTTCATTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAAgtaaagtgct ... gtctgctcagCGGACTATATACTTGCCAACACCAACTTGGGGTAATCACCCAAAGGTTTTC
EST: gi|192326177|gb|FK016279.1|FK016279
EST:     CTGGTTCATTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAA                         CGGACTATATACTTGCCAACACCAACTTGGGGTAATCACCCAAAGGTTTTC
genomic: CTGGTTCATTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAAgtaaagtgct ... gtctgctcagCGGACTATATACTTGCCAACACCAACTTGGGGTAATCACCCAAAGGTTTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatgttaatttgatgatcccaccttaacatttttttactgcacttgtctgctcagCGGACTATATACTTGCCAACACCAACTTGGGGTAATCACCCAAAGGTTTTCAACTTAGCAGGGTTGTCTGTCAAAACATATCGCTACTATGCTCCAGCAA
                     ccttaac  putative branch site (score: 3)
                                          cttgtct  putative PPT
                       ttaacatttttttact  TA-rich tract