1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaagtaacttcaatttgctatagagagaaatggttaggggaaggagtaattgatgtaagatttgcatttggtgttctattccctggtctgaggctgcccgtcttatgacttactcatgaacttcttggatctcatttcagTGACAGAATTATGTGAATATGCTGCAAATGTTGACATTCCCATTGCAAGGGAATCAATTCGAGCTGTTGGGAAGATAGCATTGCAGCAGTATGATGTCAA
species | Glycine max |
transcript | GLYMA04G08480.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GCTTGAAATGCTGACTGCAGTTGCAAATGAAAGTAACACCTATGAGATAG TGACAGAATTATGTGAATATGCTGCAAATGTTGACATTCCCATTGCAAGGGEST: gi|193365187|gb|FK331442.1|FK331442
genomic: GCTTGAAATGCTGACTGCAGTTGCAAATGAAACTAACACCTATGAGATAGgtaagtaact ... ctcatttcagTGACAGAATTATGTGAATATGCTGCAAATGTTGACATTCCCATTGCAAGGG
EST: CTTGAAATGCTGACTGCAGTTGCAAATGAAAGTTAACACCTATGAGATAG TGACAGAATTATGTGAATATGCTGCAAATGTTGACATTCCCATTGCAAGGGEST: gi|24205769|gb|BU965022.1|BU965022
genomic: CTTGAAATGCTGACTGCAGTTGCAAATGAAA-CTAACACCTATGAGATAGgtaagtaact ... ctcatttcagTGACAGAATTATGTGAATATGCTGCAAATGTTGACATTCCCATTGCAAGGG
EST: GCTTGAAATGCTGACTGCAGTTGCAAATGAAAGTAACACCTATGAGATAG TGACAGAATTATGTGAATATGCTGCAAATGTTGACATTCCCATTGCAAGGG
genomic: GCTTGAAATGCTGACTGCAGTTGCAAATGAAACTAACACCTATGAGATAGgtaagtaact ... ctcatttcagTGACAGAATTATGTGAATATGCTGCAAATGTTGACATTCCCATTGCAAGGG
gtctgaggctgcccgtcttatgacttactcatgaacttcttggatctcatttcagTGACAGAATTATGTGAATATGCTGCAAATGTTGACATTCCCATTGCAAGGGAATCAATTCGAGCTGTTGGGAAGATAGCATTGCAGCAGTATGATGTCAA
gacttac putative branch site (score: 2)
tctcatttc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtaacttcaatttgctatagagagaaatggttaggggaaggagtaattgatgtaagatttgcatttggtgttctattccctggtctgaggctgcccgtcttatgacttactcatgaacttcttggatctcatttcagTGACAGAATTATGTGAATATGCTGCAAATGTTGACATTCCCATTGCAAGGGAATCAATTCGAGCTGTTGGGAAGATAGCATTGCAGCAGTATGATGTCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA