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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacattgattttcctctttacaatctggttttagctccacaaagtgttgtcagcatacttagctagtttttttaattgtatcttgcagCTGTTGATATATATGCCAGTGTTGCTGCATCTCTTGCTGAGAGAAAAAGAGGCAGCCAATTGACAGAATTCTTTAGAAACATCAAGGGCACAATAGATGA

Basic information

species Glycine max
transcript GLYMA04G07760.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G07760.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv04s0008g04520.t01 (Vitis vinifera), 3'ss of exon 35
----------------------gtaacattgattttcctctttacaatctggtt--ttagctccacaaagtgttgtcagcatacttagctagtttttttaattgtatcttgcagCTGTTGATATATATGCCAGTGTTGCTGCATCTCTTGCTGAGAGAAAAAGAGGCAGCCAATTGACAGAATTCTTTAGAAACATCAAGGGCACAATAGATGA
                       |    |  | | || | | |  ||| ||||   |||| |  ||   |       |  ||  ||   |  || ||||  || | | | ||||||||||||||||||||  ||||||||||||| ||||||||||||||||  ||  | ||||||||||||||||| ||||||||||| ||||| || |||||
gtagccatagcattgtgaatttcttgtttgaagtatcatttgtttaatgtggtacattaggtttactttggtacaatataatttttcctttcttgttttttttttttttggcagCTGTTGATATATATGCTGGTGTTGCTGCATCACTTGCTGAGAGAAAAAAGGGTGGGCAATTGACAGAATTCTTCAGAAACATCAAAGGCACTATCGATGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctccacaaagtgttgtcagcatacttagctagtttttttaattgtatcttgcagCTGTTGATATATATGCCAGTGTTGCTGCATCTCTTGCTGAGAGAAAAAGAGGCAGCCAATTGACAGAATTCTTTAGAAACATCAAGGGCACAATAGATGA
                                    ttttaat  putative branch site (score: 3)
                              tagtttttttaattgt  TA-rich tract