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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattccttgtctctctcattccgacacagtggaaattctataccttttttcattgtagttggagtgcagtttcttacttatttggcattatgtcttttttcagGCAAAACTAGTGGCCTTAATAGCTTTGGCCTTATGTGGTGTAATG

Basic information

species Glycine max
transcript GLYMA04G07030.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G07030.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G020976_T01 (Zea mays), 3'ss of exon 5
gtattccttgtctctctcattccgacacagtggaaattctataccttttttcattgtagttggagtgcagtttcttacttatttggcattatgtcttttttc--agGCAAAACTAGTGGCCTTAATAGCTTTGGCCTTATGTGGTGTAATG
|||    | || ||| |  |||| |||            ||||   || |||   ||        | ||   |||| || ||| |   || | | | ||  |  ||| ||| ||||||||||||||||||||||||| |||||||| ||||
gtaaaagtagtttcttt--ttccaaca------------tataatgttcttccacgt--------tacaaaatctttctgattagatgttctttttcttcccatagGAAAATCTAGTGGCCTTAATAGCTTTGGCCTGATGTGGTGCAATG

upper sequence: GLYMA04G07030.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G133226_T04 (Zea mays), 3'ss of exon 5
gtattccttgtctctctcattccgacacagtggaaattctataccttttttcattgtagttgga--gtgcagtttcttacttatttggcattatgtctttttt-cagGCAAAACTAGTGGCCTTAATAGCTTTGGCCTTATGTGGTGTAATG
                          | ||  |    | | | ||    |  | |||  ||  |  || ||   |||| || ||  |   || | | | ||    ||| ||| |||||||||| |||||||||||||| |||||||| ||||
------------------------gtaaagcagttccttttt-ccaacatatagtgttctttcatcgtacaaaatctttctgatcagatgttctttttcttccatagGAAAATCTAGTGGCCTCAATAGCTTTGGCCTGATGTGGTGCAATG

upper sequence: GLYMA04G07030.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv04s0008g05570.t01 (Vitis vinifera), 3'ss of exon 5
gtattccttgtctctctcattccgacacagtggaaattctataccttttttcattgtagttggagtgcagtttcttacttatttggcattatgtcttttttcagGCAAAACTAGTGGCCTTAATAGCTTTGGCCTTATGTGGTGTAATG
|||    ||  |  | | |||            ||| |    |     | |||  |||| | || | |  |||||||  |  | |  ||| |  ||||| ||||| ||| ||||||||||||||||||||||||| |||||||||||||
gtagaattt-ccatttttattttattttttaaaaaacttccaatgacatctca--gtagcttgatttc--tttcttagatgct-gatatttt--cttttctcagGGAAATCTAGTGGCCTTAATAGCTTTGGCCTAATGTGGTGTAATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcattgtagttggagtgcagtttcttacttatttggcattatgtcttttttcagGCAAAACTAGTGGCCTTAATAGCTTTGGCCTTATGTGGTGTAATG
                      ttcttac  putative branch site (score: 2)
                                       ttatgtcttttttc  putative PPT
                     tttcttacttattt  TA-rich tract