1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtcagattatgtttcttttataaattctgtgtgctttgaagtcttcttcattgtaaaatttattttaccttcccttcattctgatgtagGTTGTTTCAAGTGCCATAATTGATAAGTACATTGGAGAAAGTGCCAGGTTAATCAGAGAGATGTTTGGTTATGCACGTGATCACCAG
species | Glycine max |
transcript | GLYMA04G03180.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CATTGTTAGCTAGGGCAATTGCAAGTAATATAGATGCAAATTTCCTAAAG GTTGTTTCAAGTGCCATAATTGATAAGTACATTGGAGAAAGTEST: gi|208336740|gb|GE136012.1|GE136012
genomic: CATTGTTAGCTAGGGCAATTGCAAGTAATATAGATGCAAATTTCCTAAAGgtcagattat ... tctgatgtagGTTGTTTCAAGTGCCATAATTGATAAGTACATTGGAGAAAGT
EST: CATTGTTAGCTAGGGCAATTGCAAGTAATATAGATGCAAATTTCCTAAAG GTTGTTTCAAGTGCCATAATTGATAAGTACATTGGAGAAAGTGCCAGGTTA
genomic: CATTGTTAGCTAGGGCAATTGCAAGTAATATAGATGCAAATTTCCTAAAGgtcagattat ... tctgatgtagGTTGTTTCAAGTGCCATAATTGATAAGTACATTGGAGAAAGTGCCAGGTTA
tttgaagtcttcttcattgtaaaatttattttaccttcccttcattctgatgtagGTTGTTTCAAGTGCCATAATTGATAAGTACATTGGAGAAAGTGCCAGGTTAATCAGAGAGATGTTTGGTTATGCACGTGATCACCAG
ttctgat putative branch site (score: 3)
tttattttaccttccc CT-rich tract
ttcttcattgtaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagattatgtttcttttataaattctgtgtgctttgaagtcttcttcattgtaaaatttattttaccttcccttcattctgatgtagGTTGTTTCAAGTGCCATAATTGATAAGTACATTGGAGAAAGTGCCAGGTTAATCAGAGAGATGTTTGGTTATGCACGTGATCACCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG