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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgaaataccataaattttcttacccctacccatttcttttgctaaagggtggaggtgtgagttcttaattcagaaattgcattgatctcacattgatgtatgttttcactttggttgaagGGAGAAGAATTAAGAAAACTGATTGGTGCTCCTGCCTACATCGAGTGTAGTTCAAAAACACAGCAG

Basic information

species Glycine max
transcript GLYMA04G02540.2
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G02540.2 (Glycine max), 3'ss of exon 5
lower sequence: Vv18s0001g14670.t01 (Vitis vinifera), 3'ss of exon 5
gtatgaaataccataaattttcttacccctacccatttcttttgctaaagggtggaggtgtgagttcttaattcagaaattgcattgatctcacattgatgtatgttttcactttggttgaagGGAGAAGAATTAAGAAAACTGATTGGTGCTCCTGCCTACATCGAGTGTAGTTCAAAAACACAGCAG
||| | |  |       ||  |        |    |   | ||| |      | | ||   |  || ||| |  |    ||   || ||||    ||      ||   |  | |    | |||||||||||| | |  ||| |||||||||| |||||||| || || ||||| |||||||||||||||
gtaaggatcatggccgcttaaccagtaaagaaatttccttcttgttttttttttggggg--ggatttttagtatacttgttc--ttaatcttttgttc-----tggccttgcct---ctaaagGGAGAAGAACTGAAGAAAGTGATTGGTGCGCCTGCCTATATTGAATGTAGCTCAAAAACACAGCAG

upper sequence: GLYMA04G02540.2 (Glycine max), 3'ss of exon 5
lower sequence: EFJ16760 (Selaginella moellendorffii), 3'ss of exon 5
gtatgaaataccataaattttcttacccctacccatttcttttgctaaagggtggaggtgtgagttcttaattcagaaattgcattgatctcacattgatgtatgttttcactttggttgaagGGAGAAGAATTAAGAAAACTGATTGGTGCTCCTGCCTACATCGAGTGTAGTTCAAAAACACAGCAG
                                                   ||  |      |  | ||  |||     ||  | ||  |  |     ||   |||||||           |||| |||||| | || || |  || |||||| ||||||||||||||||||| || ||||| ||||||
---------------------------------------------------gtacaaaaaatatgtttttgttcgttctttctaatgccccgagtcatattcgtgttttcc----------agGGCGAAGAACTGAGGAAGCAAATCGGTGCTGCTGCCTACATCGAGTGTAGCTCGAAAACCCAGCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298173197|gb|HO020181.1|HO020181
EST:     AGCAATTTTTTATGGACCACCCTGGTGCAGTACCAATTACTACAGCACAG                         GGAGAAGAATTAAGAAAACTGATTGGTGCTCCTGCCTACATCGAGTGTAGT
genomic: AGCAATTTTTTATGGACCACCCTGGTGCAGTACCAATTACTACAGCACAGgtatgaaata ... ttggttgaagGGAGAAGAATTAAGAAAACTGATTGGTGCTCCTGCCTACATCGAGTGTAGT
EST: gi|21255617|gb|BQ452505.1|BQ452505
EST:     AGCAATTTTTTATGGACCACCCTGGTGCAGTACCAATTACTACAGCACAG                         GGAGAAGAATTAAGAAAACTGATTGGTGCTCCTGCCTACATCGAGTGTAGT
genomic: AGCAATTTTTTATGGACCACCCTGGTGCAGTACCAATTACTACAGCACAGgtatgaaata ... ttggttgaagGGAGAAGAATTAAGAAAACTGATTGGTGCTCCTGCCTACATCGAGTGTAGT
EST: gi|16349155|gb|BI974750.1|BI974750
EST:     AGCAATTTTTTATGGACCACCCTGGTGCAGTACCAATTACTACAGCACAG                         GGAGAAGAATTAAGAAAACTGATTGGTGCTCCTGCCTACATCGAGTGTAGT
genomic: AGCAATTTTTTATGGACCACCCTGGTGCAGTACCAATTACTACAGCACAGgtatgaaata ... ttggttgaagGGAGAAGAATTAAGAAAACTGATTGGTGCTCCTGCCTACATCGAGTGTAGT
EST: gi|20449761|gb|BQ253885.1|BQ253885
EST:     AGCAATTTTTTATGGACCACCCTGGTGCAGTACCAATTACTACAGCACAG                         GGAGAAGAATTAAGAAAACTGATTGGTGCTCCTGCCTACATCGAGTGTAGT
genomic: AGCAATTTTTTATGGACCACCCTGGTGCAGTACCAATTACTACAGCACAGgtatgaaata ... ttggttgaagGGAGAAGAATTAAGAAAACTGATTGGTGCTCCTGCCTACATCGAGTGTAGT
EST: gi|16347027|gb|BI972622.1|BI972622
EST:     AGCAATTTTTTATGGACCACCCTGGTGCAGTACCAATTACTACAGCACAG                         GGAGAAGAATTAAGAAAACTGATTGGTGCTCCTGCCTACATCGAGTGTAGT
genomic: AGCAATTTTTTATGGACCACCCTGGTGCAGTACCAATTACTACAGCACAGgtatgaaata ... ttggttgaagGGAGAAGAATTAAGAAAACTGATTGGTGCTCCTGCCTACATCGAGTGTAGT
EST: gi|298171524|gb|HO016556.1|HO016556
EST:     AGCAATTTTTTATGGACCACCCTGGTGCAGTACCAATTACTACAGCACAG                         GGAGAAGAATTAAGAAAACTGATTGGTGCTCCTGCCTACATCGAGTGTAGT
genomic: AGCAATTTTTTATGGACCACCCTGGTGCAGTACCAATTACTACAGCACAGgtatgaaata ... ttggttgaagGGAGAAGAATTAAGAAAACTGATTGGTGCTCCTGCCTACATCGAGTGTAGT
EST: gi|209720783|gb|BW657757.1|BW657757
EST:     AGCAATTTTTTATGGACCACCCTGGTGCAGTACCAATTACTACAGCACAG                         GGAGAAGAATTAAGAAAACTGATTGGTGCTCCTGCCTACATCGAGT
genomic: AGCAATTTTTTATGGACCACCCTGGTGCAGTACCAATTACTACAGCACAGgtatgaaata ... ttggttgaagGGAGAAGAATTAAGAAAACTGATTGGTGCTCCTGCCTACATCGAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taattcagaaattgcattgatctcacattgatgtatgttttcactttggttgaagGGAGAAGAATTAAGAAAACTGATTGGTGCTCCTGCCTACATCGAGTGTAGTTCAAAAACACAGCAG
                                     ttttcacttt  CT-rich tract
                                 tatgtttt  TA-rich tract