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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactataaattttcttatcaccacccctttctgttgggagagggggagagatatgatttattgattcataaatacattgatcctaccttgatatttgttttactttggtggaagGGAGAAGAATTGAGAAAGCTGATTGGTGCTCCGGCCTACATTGAGTGTAGTTCCAAAACGCAACAG

Basic information

species Glycine max
transcript GLYMA04G02530.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58014216|gb|CX700958.1|CX700958
EST:     AGCAATTTTTTATGGACCATCCTGGTGCAGTGCCAATTACTACAGCACAG                         GGAGAAGAATTGAGAAAGCTGATTGGTGCTCCGGCCTACATTGAGTGTAGT
genomic: AGCAATTTTTTATGGACCATCCTGGTGCAGTGCCAATTACTACAGCACAGgtactataaa ... ttggtggaagGGAGAAGAATTGAGAAAGCTGATTGGTGCTCCGGCCTACATTGAGTGTAGT
EST: gi|192331824|gb|FK024928.1|FK024928
EST:     AGCAATTTTTTATGGACCATCCTGGTGCAGTGCCAATTACTACAGCACAG                         GGAGAAGAATTGAGAAAGCTGATTGGTGCTCCGGCCTACATTGAGTGTAGT
genomic: AGCAATTTTTTATGGACCATCCTGGTGCAGTGCCAATTACTACAGCACAGgtactataaa ... ttggtggaagGGAGAAGAATTGAGAAAGCTGATTGGTGCTCCGGCCTACATTGAGTGTAGT
EST: gi|193696036|gb|FK637504.1|FK637504
EST:     AGCAATTTTTTATGGACCATCCTGGTGCAGTGCCAATTACTACAGCACAG                         GGAGAAGAATTGAGAAAGCTGATTGGTGCTCCGGCCTACATTGAGTGTAGT
genomic: AGCAATTTTTTATGGACCATCCTGGTGCAGTGCCAATTACTACAGCACAGgtactataaa ... ttggtggaagGGAGAAGAATTGAGAAAGCTGATTGGTGCTCCGGCCTACATTGAGTGTAGT
EST: gi|58024705|gb|CX711446.1|CX711446
EST:     AGCAATTTTTTATGGACCATCCTGGTGCAGTGCCAATTACTACAGCACAG                         GGAGAAGAATTGAGAAAGCTGATTGGTGCTCCGGCNTACATTGAGTGTAGT
genomic: AGCAATTTTTTATGGACCATCCTGGTGCAGTGCCAATTACTACAGCACAGgtactataaa ... ttggtggaagGGAGAAGAATTGAGAAAGCTGATTGGTGCTCCGGCCTACATTGAGTGTAGT
EST: gi|298196909|gb|HO041652.1|HO041652
EST:     AGCAATTTTTTATGGACCATCCTGGTGCAGTGCCAATTACTACAGCACAG                         GGAGAAGAATTGAGAAAGCTGATTGGTGCTCCGGCCTACATTGAGTGTAGT
genomic: AGCAATTTTTTATGGACCATCCTGGTGCAGTGCCAATTACTACAGCACAGgtactataaa ... ttggtggaagGGAGAAGAATTGAGAAAGCTGATTGGTGCTCCGGCCTACATTGAGTGTAGT
EST: gi|58021086|gb|CX707828.1|CX707828
EST:     AGCAATTTTTTATGGACCATCCTGGTGCAGTGCCAATTACTACAGCACAG                         GGAGAAGAATTGAGAAAGCTGATTGGTGCTCCGGCCTACATTGAGTGTAGT
genomic: AGCAATTTTTTATGGACCATCCTGGTGCAGTGCCAATTACTACAGCACAGgtactataaa ... ttggtggaagGGAGAAGAATTGAGAAAGCTGATTGGTGCTCCGGCCTACATTGAGTGTAGT
EST: gi|151393592|gb|EV263467.1|EV263467
EST:     AGCAATTTTTTATGGACCATCCTGGTGCAGTGCCAATTACTACAGCACAG                         GGAGAAGAATTGAGAAAGCTGATTGGTGCTCCGGCCTACATTGAGTGTAGT
genomic: AGCAATTTTTTATGGACCATCCTGGTGCAGTGCCAATTACTACAGCACAGgtactataaa ... ttggtggaagGGAGAAGAATTGAGAAAGCTGATTGGTGCTCCGGCCTACATTGAGTGTAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgattcataaatacattgatcctaccttgatatttgttttactttggtggaagGGAGAAGAATTGAGAAAGCTGATTGGTGCTCCGGCCTACATTGAGTGTAGTTCCAAAACGCAACAG
                                      ttttacttt  CT-rich tract
                               atatttgttttacttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtactataaattttcttatcaccacccctttctgttgggagagggggagagatatgatttattgattcataaatacattgatcctaccttgatatttgttttactttggtggaagGGAGAAGAATTGAGAAAGCTGATTGGTGCTCCGGCCTACATTGAGTGTAGTTCCAAAACGCAACAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT