Sequence
atgc intronic sequence ATGC exonic sequence...ttgtgtgcagttgtgcacttgtcattactcacgtgttttccgtacctattaggttcttcaaaaattcattatcatcttatactttctttgttttgttcagTGGTTGAACAATTGTGTTGGAAAGAAGAATTACATCACGTTTGTGTGTCTTATGGCAGTGAGCCTAGTTTGG
Basic information
species | Glycine max |
transcript | GLYMA04G01720.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA04G01720.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G010011_T02 (Zea mays), 3'ss of exon 6
ttgtgtgcagttgtgcacttgtcattactcacgtgttttccgtacctattaggttcttcaaaaattcattatc--atcttatactttctttgttttgttcagTGGTTGAACAATTGTGTTGGAAAGAAGAATTACATCACGTTTGTGTGTCTTATGGCAGTGAGCCTAGTTTGG
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ttatgcaacatagctaatttggctttcttcgtct-tttctaatttttgttgatttttcccttctgttactactcaaacctgtgttttatct-tttgatgcagTGGCTGAACAATTGTGTTGGAAGAAAAAATTATATCACATTTTTATGCCTTATGGCTGTGAGTCTGGCTTGG
upper sequence: GLYMA04G01720.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv18s0122g00920.t01 (Vitis vinifera), 3'ss of exon 5
-ttgtgtgcagttgtgcacttgtcattactcacgtgttttccgtacctattaggttcttcaaaaattcattatcatct-tatactttctttgttttgttcagTGGTTGAACAATTGTGTTGGAAAGAAGAATTACATCACGTTTGTGTGTCTTATGGCAGTGAGCCTAGTTTGG
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ataattggcaattatgtttacggaacaggctgagc-tttcctccatttat-gtattaatatcagttttgtcatgacaagtattagctgcctctattgtgcagTGGTTAAATAATTGTGTGGGGAGGAAAAATTATATCACGTTCGTGTGCCTTATGGCAGTGAGCCTTGTCTGGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151395855|gb|EV265732.1|EV265732EST: ATTGTCGAAGTTGTGACAAATGTGTTGATGGATTTAATCACCATTGTCGG TGGTTGAACAATTGTGTTGGAAAG
genomic: ATTGTCGAAGTTGTGACAAATGTGTTGATGGATTTGATCACCATTGTCGGgtaaattgtg ... ttttgttcagTGGTTGAACAATTGTGTTGGAAAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctattaggttcttcaaaaattcattatcatcttatactttctttgttttgttcagTGGTTGAACAATTGTGTTGGAAAGAAGAATTACATCACGTTTGTGTGTCTTATGGCAGTGAGCCTAGTTTGG
ctttctttgttttgtt CT-rich tract
aaaaattcattatcat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttgtgtgcagttgtgcacttgtcattactcacgtgttttccgtacctattaggttcttcaaaaattcattatcatcttatactttctttgttttgttcagTGGTTGAACAATTGTGTTGGAAAGAAGAATTACATCACGTTTGTGTGTCTTATGGCAGTGAGCCTAGTTTGG
- - - gcagttg
- - - - - - -tgcactt
- - - - - - - - - - - - - - -cacgtgt
- - - - - - - - - - - - - - - - - - - -ccgtacc