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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgattcaaggatttctccatattttctttaatgtatcccgtgaaaatccaatgagtcttatgtgtgtgttttgtttgtcgttgtttcagATGAACTTGGTTGATTGGTTTAAGGGAATGGTTGCAAGTCGACATGGCGATGAGCTAGTTGATCCATTAATTGATATTCAGCCCTCTCCAAGATCTTTGA

Basic information

species Glycine max
transcript GLYMA04G01440.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G01440.1 (Glycine max), 3'ss of exon 5
lower sequence: AT4G34500.1 (Arabidopsis thaliana), 3'ss of exon 5
gtgattcaaggatttctccatattttctttaatgtatcccgtgaaaatccaatgagtcttatgtgtgtgttttgtttgtcgttgtttcagATGAACTTGGTTGATTGGTTTAAGGGAATGGTTGCAAGTCGACATGGCGATGAGCTAGTTGATCCATTAATTGATATTCAGCCCTCTCCAAGATCTTTGA
|| |||  |  |  | |  | | |  |   |   |  || |  || | |  | |    | || ||| ||||      |      || ||||||||||| || |||||||| || ||||||||||||||| ||| ||| || ||  |  | || ||   |||  | |     ||  |||||||| ||||||
gtaatt-gaaaacgtttgta-agtaacaaaacctttacctgccaagaccatacgcaaataat-tgtttgtt------gaaacatttgcagATGAACTTAGTGGATTGGTTCAAAGGAATGGTTGCAAGTAGACGTGGAGAAGAAGTTATAGACCCTAAAATCAAGACATCACCTCCTCCAAGAGCTTTGA

upper sequence: GLYMA04G01440.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv03s0063g02510.t01 (Vitis vinifera), 3'ss of exon 5
gtgatt-caaggatttctccatattttctttaatgtatcccgtgaaaatccaatgagtcttatgtgtgtgttttgtttgtcgttgtttcagATGAACTTGGTTGATTGGTTTAAGGGAATGGTTGCAAGTCGACATGGCGATGAGCTAGTTGATCCATTAATTGATATTCAGCCCTCTCCAAGATCTTTGA
||||   ||||  ||| |||||  ||   |  ||  ||  | |  |   | | |  |||  ||     | || |  ||| |   ||||||||||||||| |||||||||||||| |||||||| ||  |||| | ||| || ||||| || || || || |||||  |||| |||||||||||| ||||||
gtgaaaacaagtttttttccatggttgtgtgcatcaatttcatacactgctactctgtc--ataacactattctcattgcctgggtttcagATGAACTTAGTTGATTGGTTTAAAGGAATGGTAGCTGGTCGTCGTGGAGAAGAGCTGGTGGACCCTTTGATTGAAGTTCAACCCTCTCCAAGAGCTTTGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51344256|gb|CO984989.1|CO984989
EST:     AGTTAATTACAGGAAGGAGTCCCATTGATTATTCTAGACCACCTGGAGAG                         ATGAACTTGGTTGATTGGTTTAAGGGAATGGTTGCAAGTCGACATGGCGAT
genomic: AGTTAATTACAGGAAGGAGTCCCATTGATTATTCTAGACCACCTGGAGAGgtgattcaag ... gttgtttcagATGAACTTGGTTGATTGGTTTAAGGGAATGGTTGCAAGTCGACATGGCGAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcccgtgaaaatccaatgagtcttatgtgtgtgttttgtttgtcgttgtttcagATGAACTTGGTTGATTGGTTTAAGGGAATGGTTGCAAGTCGACATGGCGATGAGCTAGTTGATCCATTAATTGATATTCAGCCCTCTCCAAGATCTTTGA
                                              ttgtttc  CT-rich tract
                                  ttttgttt  TA-rich tract