1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtatgttccaatcagtaacttttgatgttaaaatattccatgttgagagaagaaggggtattctagtgttatgttgtctgcttgtctgactgaacttcattccatcatttcagGGTTGATAGAAACAAATATCAGATTCAAATTCCACTGCCTCCAAAAATTGACCCAAGTGTTACCATGATGACAGTTGAAGAGAAGCCTGATGTGACATAT
species | Glycine max |
transcript | GLYMA03G42370.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ACCGACATTGAGGAAGGGATGCGTGTTGG GGTTGATAGAAACAAATATCAGATTCAAATTCCACTGCCTCCAAAAATTGAEST: gi|193314171|gb|FK280098.1|FK280098
genomic: ACCGACATTGAGGAAGGGATGCGTGTTGGgtatgttcca ... atcatttcagGGTTGATAGAAACAAATATCAGATTCAAATTCCACTGCCTCCAAAAATTGA
EST: CTGGGCGACAAAGTTTCACCCACCGACATTGAGGAAGGGATGCGTGTTGG GGTTGATAGAAACAAATATCAGATTCAAATTCCACTGCCTCCAAAAATTGAEST: gi|208215664|gb|GE008516.1|GE008516
genomic: CTGGGCGACAAAGTTTCACCCACCGACATTGAGGAAGGGATGCGTGTTGGgtatgttcca ... atcatttcagGGTTGATAGAAACAAATATCAGATTCAAATTCCACTGCCTCCAAAAATTGA
EST: CTGGGCGACAAAGTTTCACCCACCGACATTGAGGAAGGGATGCGTGTTGG GGTTGATAGAAACAAATATCAGATTCAAATTCCACTGEST: gi|208127872|gb|GD924022.1|GD924022
genomic: CTGGGCGACAAAGTTTCACCCACCGACATTGAGGAAGGGATGCGTGTTGGgtatgttcca ... atcatttcagGGTTGATAGAAACAAATATCAGATTCAAATTCCACTG
EST: TGGGCGACAAAGTTTTCACCCACCGACATTGAGGAAGGGATGCGTGTTGG GGTTGATAGAAACAAATATCAGATTCAAATTCCACTGCCTCCAAAAATTGAEST: gi|209702899|gb|BW667434.1|BW667434
genomic: TGGGCGACAAAG-TTTCACCCACCGACATTGAGGAAGGGATGCGTGTTGGgtatgttcca ... atcatttcagGGTTGATAGAAACAAATATCAGATTCAAATTCCACTGCCTCCAAAAATTGA
EST: CTGGGCGACAAAGTTTCACCCACCGACATTGAGGAAGGGATGCGTGTTGG GGTTGATAGAAACAAATATCAGATTCAAATTCCACTGCCTCCAAAAATTGA
genomic: CTGGGCGACAAAGTTTCACCCACCGACATTGAGGAAGGGATGCGTGTTGGgtatgttcca ... atcatttcagGGTTGATAGAAACAAATATCAGATTCAAATTCCACTGCCTCCAAAAATTGA
tattctagtgttatgttgtctgcttgtctgactgaacttcattccatcatttcagGGTTGATAGAAACAAATATCAGATTCAAATTCCACTGCCTCCAAAAATTGACCCAAGTGTTACCATGATGACAGTTGAAGAGAAGCCTGATGTGACATAT
gtctgac putative branch site (score: 3)
ttccatc putative PPT
ttatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgttccaatcagtaacttttgatgttaaaatattccatgttgagagaagaaggggtattctagtgttatgttgtctgcttgtctgactgaacttcattccatcatttcagGGTTGATAGAAACAAATATCAGATTCAAATTCCACTGCCTCCAAAAATTGACCCAAGTGTTACCATGATGACAGTTGAAGAGAAGCCTGATGTGACATAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC