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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatccagtgtacaatattctattttaattattgaataggcgataactatttatttaagaatttttttctgcattgttttgatagGAGCCTGTTCTTCCTGGATGTTTTCTGCGAGCCCGGGCCATTGGACTTATGCCCATGATTGACGGG

Basic information

species Glycine max
transcript GLYMA03G42280.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G42280.1 (Glycine max), 3'ss of exon 5
lower sequence: AT1G01050.1 (Arabidopsis thaliana), 3'ss of exon 5
--gtaaatccagtgtacaatattctattttaattattgaataggcgataactatttatttaagaatttttttctgcattgttttgatagGAGCCTGTTCTTCCTGGATGTTTTCTGCGAGCCCGGGCCATTGGACTTATGCCCATGATTGACGGG
   | | ||     | |  | |  |||| |   |||   ||  ||   || | ||| | |   || | | |  |    | |||   ||||| ||||| ||||| || ||||||||||| ||| | ||||||||| | ||||| |||||||||  |
gtattactctttctttctttctcatattatccctatactatttgcaccaattttttgtatttcaaatatatattattatctttgtgtagGAACCTGTGCTTCCGGGTTGTTTTCTGCGTGCCAGAGCCATTGGATTAATGCCTATGATTGACCAG

upper sequence: GLYMA03G42280.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv02s0025g02980.t01 (Vitis vinifera), 3'ss of exon 4
--------------------gtaaatccagtgtacaa---tattctattttaattattgaataggcgataactatttatttaagaattttttt-----------ctgcattgttttgatagGAGCCTGTTCTTCCTGGATGTTTTCTGCGAGCCCGGGCCATTGGACTTATGCCCATGATTGACGGG
                     | |||| |   ||  |     |  |  |||    | | || ||  |    | | |   ||   | | |||||           |||   | |||  | |||| || ||| ||||||| |||||||| |||||| |||||||||| || ||||||||||||||   |
gtagttcaaactagatagcatttaatcaataataagagctcgtctttgttttgcaactaaacagttgtgggcgagtagattggaagtgtttttacaagctcaaactgacatttttgaacagGAACCAGTTGTTCCTGGCTGTTTTCTTCGAGCCAGGGCCATTGGGCTGATGCCCATGATTGATCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgaataggcgataactatttatttaagaatttttttctgcattgttttgatagGAGCCTGTTCTTCCTGGATGTTTTCTGCGAGCCCGGGCCATTGGACTTATGCCCATGATTGACGGG
          cgataac  putative branch site (score: 3)
                                           ttgtttt  putative PPT
            ataactatttatttaa  TA-rich tract