1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...aaaaaaaaaaaaaatgatgctcaaatgctccgattaatgttttttaaatagtttttgtgaaacttccacctgctgagaatactacaatccttactttcagTTGGAGAAAGAGGCCTTTGTAAAAGGTGTTCCAATAGGACAAGCTCTTGATATAGACATCCCCCCTCCACGGCCAAAAAGAAAACCAAGCAATCCTTATC
species | Glycine max |
transcript | GLYMA03G42260.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CAAAGACTGCTGTACAAATCAGGAGTCATGCTCAGAAATTCTTTACAAAG TTGGAGAAAGAGGCCTTTGTAAAAGGTGTTCCAATAGGACAAGCTCTTGATEST: gi|12690320|gb|BG156656.1|BG156656
genomic: CAAAGACTGCTGTACAAATCAGGAGTCATGCTCAGAAATTCTTTACAAAGgtaaatccgt ... ttactttcagTTGGAGAAAGAGGCCTTTGTAAAAGGTGTTCCAATAGGACAAGCTCTTGAT
EST: CAAAGACTGCTGTACAAATCAGGAGTCATGCTCAGAAATTCTTTACAAAG TTGGAGAAAGAGGCCTTTGTAAAAGGTGTTCCAATAGGACAAGCTCTTGATEST: gi|193545765|gb|FK501276.1|FK501276
genomic: CAAAGACTGCTGTACAAATCAGGAGTCATGCTCAGAAATTCTTTACAAAGgtaaatccgt ... ttactttcagTTGGAGAAAGAGGCCTTTGTAAAAGGTGTTCCAATAGGACAAGCTCTTGAT
EST: CAAAGACTGCTGTACAAATCAGGAGTCATGCTCAGAAATTCTTTACAAAG TTGGAGAAAGAGGCCTTTGTAAAAGGTGTTCCAATAGGACAAGCTCTTGATEST: gi|208144335|gb|GD941190.1|GD941190
genomic: CAAAGACTGCTGTACAAATCAGGAGTCATGCTCAGAAATTCTTTACAAAGgtaaatccgt ... ttactttcagTTGGAGAAAGAGGCCTTTGTAAAAGGTGTTCCAATAGGACAAGCTCTTGAT
EST: CAAAGACTGCTGTACAAATCAGGAGTCATGCTCAGAAATTCTT-ACAA-G TTGGAGAAAGAGGCCTTTGTAAAAGGTGTTCCAATAGGACAAGCTCTTGATEST: gi|120496677|gb|EH224844.1|EH224844
genomic: CAAAGACTGCTGTACAAATCAGGAGTCATGCTCAGAAATTCTTTACAAAGgtaaatccgt ... ttactttcagTTGGAGAAAGAGGCCTTTGTAAAAGGTGTTCCAATAGGACAAGCTCTTGAT
EST: CAAAGACTGCTGTACAAATCAGGAGTCATGCTCAGAAATTCTTTACAAAG TTGGAGAAAGAGGCCTTTGTAAAAGGTGTTCCAATAGGACAAGCTCTTGAT
genomic: CAAAGACTGCTGTACAAATCAGGAGTCATGCTCAGAAATTCTTTACAAAGgtaaatccgt ... ttactttcagTTGGAGAAAGAGGCCTTTGTAAAAGGTGTTCCAATAGGACAAGCTCTTGAT
aaatagtttttgtgaaacttccacctgctgagaatactacaatccttactttcagTTGGAGAAAGAGGCCTTTGTAAAAGGTGTTCCAATAGGACAAGCTCTTGATATAGACATCCCCCCTCCACGGCCAAAAAGAAAACCAAGCAATCCTTATC
tccttac putative branch site (score: 2)
tccttactttc CT-rich tract
tttttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaaaaaaaaaaaatgatgctcaaatgctccgattaatgttttttaaatagtttttgtgaaacttccacctgctgagaatactacaatccttactttcagTTGGAGAAAGAGGCCTTTGTAAAAGGTGTTCCAATAGGACAAGCTCTTGATATAGACATCCCCCCTCCACGGCCAAAAAGAAAACCAAGCAATCCTTATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
aaaaaaa
- - - - - - - tgatgct
- - - - - - - - - - - -aatgctc
- - - - - - - - - - - - - - - - - - - - - - - - - - ttttgtg