1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...aattgcacaattgcaatacctggagaaccaacattgttatgaagctgaaattaaattcgggcatatacttagatttttgtgttttgttccttttgtgcagCTTGCCTTCTTCACCAACAGGACAGTGAGTGCAAATGAGGAGTTGACATGG
species | Glycine max |
transcript | GLYMA03G41020.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TCATAGACATTCCTGTCGAAATAGAGAGTCCTGATCATCATTATTATCAT CTTGCCTTCTTCACCAACAGGACAGTGAGTGCAAATGAGGAGTTGACATGGEST: gi|193508516|gb|FK465379.1|FK465379
genomic: TCATAGACATTCCTGTCGAAATAGAGAGTCCTGATCATCATTATTATCATgtaatgatta ... ttttgtgcagCTTGCCTTCTTCACCAACAGGACAGTGAGTGCAAATGAGGAGTTGACATGG
EST: TCATAGACATTCCTGTCGAAATAGAGAGTCCTGATCATCATTATTATCAT CTTGCCTTCTTCACCAACAGGACAGTGAGTGCAAATGAGGAGTTGACATGGEST: gi|298176786|gb|HO023259.1|HO023259
genomic: TCATAGACATTCCTGTCGAAATAGAGAGTCCTGATCATCATTATTATCATgtaatgatta ... ttttgtgcagCTTGCCTTCTTCACCAACAGGACAGTGAGTGCAAATGAGGAGTTGACATGG
EST: TCATAGACATTCCTGTCGAAATAGAGAGTCCTGATCATCATTATTATCAT CTTGCCTTCTTCACCAACAGEST: gi|193464117|gb|FK426123.1|FK426123
genomic: TCATAGACATTCCTGTCGAAATAGAGAGTCCTGATCATCATTATTATCATgtaatgatta ... ttttgtgcagCTTGCCTTCTTCACCAACAG
EST: TCATAGACATTCCTGTCGAAATAGAGAGTCCTGATCATCATTATTATCAT CTTGCCTTCTTCACCATCAGGACAGTGAGTGCAAATGAGGAGTTGACATGG
genomic: TCATAGACATTCCTGTCGAAATAGAGAGTCCTGATCATCATTATTATCATgtaatgatta ... ttttgtgcagCTTGCCTTCTTCACCAACAGGACAGTGAGTGCAAATGAGGAGTTGACATGG
tgaaattaaattcgggcatatacttagatttttgtgttttgttccttttgtgcagCTTGCCTTCTTCACCAACAGGACAGTGAGTGCAAATGAGGAGTTGACATGG
tttttgtgttttgttc CT-rich tract
atatacttagattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aattgcacaattgcaatacctggagaaccaacattgttatgaagctgaaattaaattcgggcatatacttagatttttgtgttttgttccttttgtgcagCTTGCCTTCTTCACCAACAGGACAGTGAGTGCAAATGAGGAGTTGACATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- -tgcacaa
- - - - - - - -atacctg
- - - - - - - - - - - - - -ccaacat
- - - - - - - - - - - - - - - - - - - - gaagctg
- - - - - - - - - - - - - - - - - - - - - - - -aaattaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catatac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttttgtg