1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtcagttcaacttccccaaattcatagtaatgtacagctctcataactattttttcactaataaataaataatttgaatttctgtttaattatgagccacatgaaaagagggtagaaaaataagactaaaaaaattggttagctagattttttgtttatgttttaatgagatcactttgttaaaagcttttattgatagAGAGCTTGGCATTGGAATTGTACCATATAGCCCTCTTGGTCGAGGCTTTTTTGGTGGCAAAGGAGTTCTGGAAAATATGCCTGCAAGTACAGTCCTG
species | Glycine max |
transcript | GLYMA03G40880.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGGTCCCTATGGACTCGTGACATTGAAGAGGAGATAATTCCTCTCTGCAG AGAGCTTGGCATTGGAATTGTACCATATAGCCCTCTTGGTCGAGGCTTTTTEST: gi|58016837|gb|CX703579.1|CX703579
genomic: TGGTCCCTATGGACTCGTGACATTGAAGAGGAGATAATTCCTCTCTGCAGgtcagttcaa ... ttattgatagAGAGCTTGGCATTGGAATTGTACCATATAGCCCTCTTGGTCGAGGCTTTTT
EST: TGGTCCCTATGGACTCGTGACATTGAAGAGGAGATAATTCCTCTCTGCAG AGAGCTTGGCATTGGAATTGTACCATATAGCCCTCTTGGTCGAGGCTTTTTEST: gi|22525360|gb|BU084171.1|BU084171
genomic: TGGTCCCTATGGACTCGTGACATTGAAGAGGAGATAATTCCTCTCTGCAGgtcagttcaa ... ttattgatagAGAGCTTGGCATTGGAATTGTACCATATAGCCCTCTTGGTCGAGGCTTTTT
EST: TGGTCCCTATGGACTCGTGACATTGAAGAGGAGATAATTCCTCTCTGCAG AGAGCTTGGCATTGGAATTGTACCATATAGCCCTCTTGGTCGAGGCTTTTTEST: gi|10709064|gb|BF008788.1|BF008788
genomic: TGGTCCCTATGGACTCGTGACATTGAAGAGGAGATAATTCCTCTCTGCAGgtcagttcaa ... ttattgatagAGAGCTTGGCATTGGAATTGTACCATATAGCCCTCTTGGTCGAGGCTTTTT
EST: TGGTCCCTATGGACTCGTGACATTGAAGAGGAGATAATTCCTCTCTGCAG AGAGCTTGGCATTGGAATTGTACCATATAGCCCTCTTGGTCGAGGCTTTTTEST: gi|15203192|gb|BI425960.1|BI425960
genomic: TGGTCCCTATGGACTCGTGACATTGAAGAGGAGATAATTCCTCTCTGCAGgtcagttcaa ... ttattgatagAGAGCTTGGCATTGGAATTGTACCATATAGCCCTCTTGGTCGAGGCTTTTT
EST: TGGTCCCTATGGACTCGTGACATTGAACAGGAGATAATTCCTCTCTGCAA AGAGCTTGGCATTGGAATTGTACCATATAGCCCTCTTEST: gi|26048905|gb|CA785358.1|CA785358
genomic: TGGTCCCTATGGACTCGTGACATTGAAGAGGAGATAATTCCTCTCTGCAGgtcagttcaa ... ttattgatagAGAGCTTGGCATTGGAATTGTACCATATAGCCCTCTT
EST: TGGTCCCTATGGACTCGTGACATTGAAGAGGAGATAATTCCTCTCTGCAG AGAGCTTGGCATTGGAATTGTACCATATAGCCCTCTTGGTCGAGGCTTTTTEST: gi|14008706|gb|BG725310.1|BG725310
genomic: TGGTCCCTATGGACTCGTGACATTGAAGAGGAGATAATTCCTCTCTGCAGgtcagttcaa ... ttattgatagAGAGCTTGGCATTGGAATTGTACCATATAGCCCTCTTGGTCGAGGCTTTTT
EST: TGGTCCCTATGGACTCGTGACATTGAAGAGGAGATAATTCCTCTCTGCAG AGAGCTTGGCATTGGAATTGTACCATATAGCCCTCTTGGTCGAGGCTTTTTEST: gi|18038680|gb|BM306974.1|BM306974
genomic: TGGTCCCTATGGACTCGTGACATTGAAGAGGAGATAATTCCTCTCTGCAGgtcagttcaa ... ttattgatagAGAGCTTGGCATTGGAATTGTACCATATAGCCCTCTTGGTCGAGGCTTTTT
EST: TGGTCCCTATGGACTCGTGACATTGAAGAGGAGATAATTCCTCTCTGCAG AGAGCTTGGCATTGGAATTGTACCATATAGCCCTCTTGGTCGAGGCTTTTTEST: gi|254343581|gb|GR857337.1|GR857337
genomic: TGGTCCCTATGGACTCGTGACATTGAAGAGGAGATAATTCCTCTCTGCAGgtcagttcaa ... ttattgatagAGAGCTTGGCATTGGAATTGTACCATATAGCCCTCTTGGTCGAGGCTTTTT
EST: TGGTCCCTATGGACTCGTGACATTGAAGAGGAGATAATTCCTCTCTGCAG AGAGCTTGGCATTGGAATTGTACCATATAGCCCTCTTGGTCGAGGCTTTTTEST: gi|254343582|gb|GR857338.1|GR857338
genomic: TGGTCCCTATGGACTCGTGACATTGAAGAGGAGATAATTCCTCTCTGCAGgtcagttcaa ... ttattgatagAGAGCTTGGCATTGGAATTGTACCATATAGCCCTCTTGGTCGAGGCTTTTT
EST: TGGTCCCTATGGACTCGTGACATTGAAGAGGAGATAATTCCTCTCTGCAG AGAGCTTGGCATTGGAATTGTACCATATAGCCCTCTTGGTCGAGGCTTTTTEST: gi|20811954|gb|BQ296432.1|BQ296432
genomic: TGGTCCCTATGGACTCGTGACATTGAAGAGGAGATAATTCCTCTCTGCAGgtcagttcaa ... ttattgatagAGAGCTTGGCATTGGAATTGTACCATATAGCCCTCTTGGTCGAGGCTTTTT
EST: ATTCCTCTCTGCAG AGAGCTTGGCATTGGAATTGTACCATATAGCCCTCTTGGTCGAGGCTTTTT
genomic: ATTCCTCTCTGCAGgtcagttcaa ... ttattgatagAGAGCTTGGCATTGGAATTGTACCATATAGCCCTCTTGGTCGAGGCTTTTT
agattttttgtttatgttttaatgagatcactttgttaaaagcttttattgatagAGAGCTTGGCATTGGAATTGTACCATATAGCCCTCTTGGTCGAGGCTTTTTTGGTGGCAAAGGAGTTCTGGAAAATATGCCTGCAAGTACAGTCCTG
ttttaat putative branch site (score: 3)
cttttatt putative PPT
ttttgtttatgtttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagttcaacttccccaaattcatagtaatgtacagctctcataactattttttcactaataaataaataatttgaatttctgtttaattatgagccacatgaaaagagggtagaaaaataagactaaaaaaattggttagctagattttttgtttatgttttaatgagatcactttgttaaaagcttttattgatagAGAGCTTGGCATTGGAATTGTACCATATAGCCCTCTTGGTCGAGGCTTTTTTGGTGGCAAAGGAGTTCTGGAAAATATGCCTGCAAGTACAGTCCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG