1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...aagttaagcacatgttagcttcttttatgtgttttgtcagttagttctaattccttgacaagatttaacattacagtcctggtccattttttgtgtttagATTGACTAAATCAGACTTCCGGGAGCCGGTGAATATTGGAAGTGATGAAATGGTCAGCATGAATGAGATGGCTGAGATTGTTCTTAGCTTTGAGGATAAG
species | Glycine max |
transcript | GLYMA03G40720.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CAAACAAGATCCTTCACCTTCATTGATGAGTGTGTTGAAGGTGTACTGAG ATTGACTAAATCAGACTTCCGGGAGCCGGTGAATATTGGAAGTGATGAAATEST: gi|298178228|gb|HO023963.1|HO023963
genomic: CAAACAAGATCCTTCACCTTCATTGATGAGTGTGTTGAAGGTGTACTGAGgtattccttg ... ttgtgtttagATTGACTAAATCAGACTTCCGGGAGCCGGTGAATATTGGAAGTGATGAAAT
EST: CAAACAAGATCCTTCACCTTCATTGATGAGTGTGTTGAAGGTGTACTGAG ATTGACTAAATCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAATEST: gi|13788218|gb|BG650810.1|BG650810
genomic: CAAACAAGATCCTTCACCTTCATTGATGAGTGTGTTGAAGGTGTACTGAGgtattccttg ... ttgtgtttagATTGACTAAATCAGACTTCCGGGAGCCGGTGAATATTGGAAGTGATGAAAT
EST: CTTCACCTTCATTGATGAGTGTGTTGAAGGTGTACTGAG ATTGACTAAATCAGACTTCCGGGAGCCGGTGAATATTGGAAGTGATGAAATEST: gi|20448810|gb|BQ252934.1|BQ252934
genomic: CTTCACCTTCATTGATGAGTGTGTTGAAGGTGTACTGAGgtattccttg ... ttgtgtttagATTGACTAAATCAGACTTCCGGGAGCCGGTGAATATTGGAAGTGATGAAAT
EST: CAAACAAGATCCTTCACCTTCATTGATGAGTGTGTTGAAGGTGTACTGAG ATTGACTAAATCAGACTTCCGGGAGCCGGTGAATATTGGAAGTGATGAAATEST: gi|298167582|gb|HO012845.1|HO012845
genomic: CAAACAAGATCCTTCACCTTCATTGATGAGTGTGTTGAAGGTGTACTGAGgtattccttg ... ttgtgtttagATTGACTAAATCAGACTTCCGGGAGCCGGTGAATATTGGAAGTGATGAAAT
EST: CAAACAAGATCCTTCACCTTCATTGATGAGTGTGTTGAAGGTGTACTGAG ATCGACTAAATCAGACTTCCGGGAGCCGGTGAATATTGGAAGTGATGAAATEST: gi|193313333|gb|FK278672.1|FK278672
genomic: CAAACAAGATCCTTCACCTTCATTGATGAGTGTGTTGAAGGTGTACTGAGgtattccttg ... ttgtgtttagATTGACTAAATCAGACTTCCGGGAGCCGGTGAATATTGGAAGTGATGAAAT
EST: CAAACAAGATCCTTCACCTTCATTGATGAGTGTGTTGAAGGTGTACTGAG ATTGACTAAATCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAAT
genomic: CAAACAAGATCCTTCACCTTCATTGATGAGTGTGTTGAAGGTGTACTGAGgtattccttg ... ttgtgtttagATTGACTAAATCAGACTTCCGGGAGCCGGTGAATATTGGAAGTGATGAAAT
tctaattccttgacaagatttaacattacagtcctggtccattttttgtgtttagATTGACTAAATCAGACTTCCGGGAGCCGGTGAATATTGGAAGTGATGAAATGGTCAGCATGAATGAGATGGCTGAGATTGTTCTTAGCTTTGAGGATAAG
tccatttttt CT-rich tract
aagatttaacatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagttaagcacatgttagcttcttttatgtgttttgtcagttagttctaattccttgacaagatttaacattacagtcctggtccattttttgtgtttagATTGACTAAATCAGACTTCCGGGAGCCGGTGAATATTGGAAGTGATGAAATGGTCAGCATGAATGAGATGGCTGAGATTGTTCTTAGCTTTGAGGATAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - cacatgt
- - - - - - - - -gcttctt
- - - - - - - - - - - - - - -tgttttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tgacaag