Sequence
atgc intronic sequence ATGC exonic sequencegtaatgtacttcaaagttcaaacatgttatgcttcttattatgtgccttaagaaaaagttcattttattgtttctatatgctccacattaaacagatagctactttggttgaattatcaatgtcaaatccattctttgatcctttaatagtgtcttgctttttagAACAATATTGTTGCCTCTGGTGGCCTTGGTGGGGAGGTTTTTATATGGGATATCGAGGCTGCCCTCGCTCCAGTCTCTAAGTGTAATGATGATACAGTTG
Basic information
species | Glycine max |
transcript | GLYMA03G40440.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA03G40440.4 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os12g06810.2 (Oryza sativa), 3'ss of exon 5
gtaatgtacttcaaagttcaaacatgttatgcttcttattatgtgccttaagaaaaagttcattttattgtttctatatgctccacattaaacagatagctactttggttgaattatcaatgtcaaatccattctttgat---cctttaatagtgtcttgctttttagAACAATATTGTTGCCTCTGGTGGCCTTGGTGGGGAGGTTTTTATATGGGATATCGAGGCTGCCCTCGCTCCAGTCTCTAAGTGTAATGATGATACAGTTG
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---------------------------------------------------------------------------gtatatt----atccagcactatgcttttctg-tggaactactcattttatcccttttgttttacatgtttttttttattctctgcaatgtagAGCAATATTGTTGCCTCTGGTGGCCTTGGCGGTGAGGTCTTTATATGGGACCTTGATTCTTCTCTTGCTCCTGTGGCCAAATCTGTAGATGCAAAAGAGG
upper sequence: GLYMA03G40440.4 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G167999_T01 (Zea mays), 3'ss of exon 5
gtaatgtacttcaaagttcaaacatgttatgcttcttattatgtgccttaagaaaaagttcattttattgtttctatatgctccacattaaacagatagctactttggttgaattatcaatgtcaaatccattctttgatcctttaatagtgtcttgctttttagAACAATATTGTTGCCTCTGGTGGCCTTGGTGGGGAGGTTTTTATATGGGATATCGAGGCTGCCCTCGCTCCAGTCTCTAAGTGTAATGATGATACAGTTG
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---------------------------------------------------------------------------------gtaatattatccacacttgtgctttt-ctgtggtatttttagccttttcattttttacagtttttttgcc--tttgaattgtagAGCAATATTGTAGCCTCTGGTGGTCTTGGTGGTGAGGTTTTCATTTGGGACCTTGATGCTGCTCTTGCTCCTGTAGCCAAATCTGTGGATGCAAAAGAGG
upper sequence: GLYMA03G40440.4 (Glycine max), 3'ss of exon 5
lower sequence: AT3G05090.1 (Arabidopsis thaliana), 3'ss of exon 5
gtaatgtacttcaaagttcaaacatgttatgcttcttattatgtgccttaagaaaaagttcattttattgtttctatatgctccacattaaacagatagctactttggttgaattatcaatgtcaaatccattctttgatcctttaatagtgtcttgctttttagAACAATATTGTTGCCTCTGGTGGCCTTGGTGGGGAGGTTTTTATATGGGATATCGAGGCTGCCCTCGCTCCAGTCTCTAAGTGTAATGATGATACAGTTG
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-----gtaatttctcatttgt-catgcttttttctttatagt-tcccactgaaaaaaattgattggtatggtggtgcaagtt-----ttgaggatatatgtgcttc----------tcattgtcgcattc------tgattctatcttgatttcacaacttttagAATAATGTTGTTGCATCTGGTGGCCTTGGTGGGGAGGTTTTTATATGGGATATTGAAGCTGCTTTGTCACCAGTTACCAAACCTAATGACGCTAATGAAG
upper sequence: GLYMA03G40440.4 (Glycine max), 3'ss of exon 5
lower sequence: Vv14s0030g01350.t01 (Vitis vinifera), 3'ss of exon 5
gtaatgtacttcaaagttcaaacatgttatgcttcttattatgtgccttaagaaaaagttcattttattgt-------ttctatatgctccacattaaacagatagctac---tttggttgaattat------caatgtcaaatccattctttgatcctttaatagtgtcttgctttttagAACAATATTGTTGCCTCTGGTGGCCTTGGTGGGGAGGTTTTTATATGGGATATCGAGGCTGCCCTCGCTCCAGTCTCTAAGTGTAATGATGATACAGTTG
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-----gtaatttctttgtcaaaattttcatggaa-ttatttactgcatagatgaagggttcttgtcagtgtaatgctgttatttaagtttcatgttcaatttaatggtgcatatttgggggcattgtgtcatattttgtcgttatcattttctgatccttttatagtgtcatgcattttagAGCAATGTTGTTGCCTCTGGTGGCCTTGGTGGGGAGGTTTTTGTATGGGATCTGGAAGCTGCACTAACTCCAGTCTCAAAGTCAAGTGATGCAATGGAGGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|209712994|gb|BW684288.1|BW684288EST: TCCGGCAACACTCTGACTATGTTACTTGCCTCGCAGCAGCAGNNNNNNNT AACAATATTGTTGCCTCTGGTGGCCTTGGTGGGGAGGTTTTTATATGGG
genomic: TCCGGCAACACTCTGACTATGTTACTTGCCTCGCAGCAGCAGAAAAAAATgtaatgtact ... tgctttttagAACAATATTGTTGCCTCTGGTGGCCTTGGTGGGGAGGTTTTTATATGGG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gaattatcaatgtcaaatccattctttgatcctttaatagtgtcttgctttttagAACAATATTGTTGCCTCTGGTGGCCTTGGTGGGGAGGTTTTTATATGGGATATCGAGGCTGCCCTCGCTCCAGTCTCTAAGTGTAATGATGATACAGTTG
ctttaat putative branch site (score: 4)
tcttgcttttt putative PPT
tttaatagt TA-rich tract