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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttggaacaatatgtgcctttttccgcaacgttgcagcaaccaaggtgtcaatgcttagtactgaacttataaatgatgttgcagGTGCTAAACCAGGATGAGACACCTTTACTGTACAGTCTTGTATTTGGCGAGGGTGTTGTGAATGATGCTACATCTGTGGTGCTTTTCAATGCAATCAAAA

Basic information

species Glycine max
transcript GLYMA03G40290.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G40290.1 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os07g47100.2 (Oryza sativa), 3'ss of exon 5
gtttg--gaacaatatgtgcctttttccgcaacgttgcagcaaccaaggtgtcaatgcttagtactgaacttataaatgatgttgcagGTGCTAAACCAGGATGAGACACCTTTACTGTACAGTCTTGTATTTGGCGAGGGTGTTGTGAATGATGCTACATCTGTGGTGCTTTTCAATGCAATCAAAA
||| |  ||||||  | |||| |    ||  |     | | |  ||| |||  ||||    |  || |||    |||        ||||| || || |||||||||||||| ||  |||||||||| ||||| || || ||||||||||| |||||||||||  | ||||||||||| ||| |  | |
gttagttgaacaaattttgccatacctcgagagagacctggattcaacgtgctaatgtaatgatcttaaccccaaaa--------cagGTCCTCAATCAGGATGAGACACCCTTTTTGTACAGTCTGGTATTCGGTGAAGGTGTTGTGAACGATGCTACATCAATTGTGCTTTTCAACGCACTACAGA

upper sequence: GLYMA03G40290.1 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os05g05590.1 (Oryza sativa), 3'ss of exon 6
gtttggaacaatatgtgcctttttccgcaacgttgcagcaaccaaggtgtcaatgcttagtactgaacttataaatgatgttgcagGTGCTAAACCAGGATGAGACACCTTTACTGTACAGTCTTGTATTTGGCGAGGGTGTTGTGAATGATGCTACATCTGTGGTGCTTTTCAATGCAATCAAAA
||||       ||    ||| ||         ||| |  |   ||     ||    | | ||   || ||    |     ||||||||||| ||||| || || |||||  |||| || ||||| || ||||| || || ||||| ||||||||||||||||| ||||| || ||||||||  || 
gtttttccatttaatgacctgttgttaatgtcttgtaaaatgaaacagcacaccattaaatatgcaattttgttac----ttgcagGTGCTTAACCAAGACGAAACACCCCTACTCTATAGTCTGGTTTTTGGTGAAGGGGTTGTCAATGATGCTACATCTGTTGTGCTCTTTAATGCAATTGAAG

upper sequence: GLYMA03G40290.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G063492_T01 (Zea mays), 3'ss of exon 6
----gtt-tggaacaatatgtgcctttttccgcaacgttgcagcaaccaaggtgtcaatgcttagtactgaacttataaatgatgttgcagGTGCTAAACCAGGATGAGACACCTTTACTGTACAGTCTTGTATTTGGCGAGGGTGTTGTGAATGATGCTACATCTGTGGTGCTTTTCAATGCAATCAAAA
    ||| | ||||||| ||    ||||  |  |        |  |  | |  | ||||  ||| |    || | || | |     |||||||||| ||||||||||| |||||  |||| || ||||| || ||||| || |||||||| |||||||| |||||||| ||||| |||||||||||  |||
gtttgttgttgaacaatttgccatttttatcttataaaaattgagat-aggaagccaat--ttaattggaaattcattact-----tgcagGTGCTTAACCAGGATGAAACACCCCTACTCTATAGTCTAGTTTTTGGTGAAGGTGTTGTTAATGATGCCACATCTGTTGTGCTCTTCAATGCAATTGAAA

upper sequence: GLYMA03G40290.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G701776_T01 (Zea mays), 3'ss of exon 2
----gtt-tggaacaatatgtgcctttttccgcaacgttgcagcaaccaaggtgtcaatgcttagtactgaacttataaatgatgttgcagGTGCTAAACCAGGATGAGACACCTTTACTGTACAGTCTTGTATTTGGCGAGGGTGTTGTGAATGATGCTACATCTGTGGTGCTTTTCAATGCAATCAAAA-
    ||| | ||||||| ||  || ||||     |         |   | |  | ||||  ||| |    || | || | |     |||||||| ||| ||||||||| |||||  |||| || ||||| || ||||| || |||||||| |||||||| |||||||| ||||| |||||||||||  ||| 
gtttgttgttgaacaatctg--ccattttatcttataaaaattgagataggaagccaat--ttaattggaaattcattact-----tgcagGTGTTAA-CCAGGATGAAACACCCCTACTCTATAGTCTAGTTTTTGGTGAAGGTGTTGTTAATGATGCCACATCTGTTGTGCTCTTCAATGCAATTGAAAA

upper sequence: GLYMA03G40290.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G704237_T01 (Zea mays), 3'ss of exon 3
----gtt-tggaacaatatgtgcctttttccgcaacgttgcagcaaccaaggtgtcaatgcttagtactgaacttataaatgatgttgcagGTGCTAAACCAGGATGAGACACCTTTACTGTACAGTCTTGTATTTGGCGAGGGTGTTGTGAATGATGCTACATCTGTGGTGCTTTTCAATGCAATCAAAA-
    ||| | ||| ||| ||    ||||  |  |        |  |  | |  | ||||  ||| |    || | || | |     |||||||| ||| ||||||||| |||||  |||| || ||||| || ||||| || |||||||| |||||||| |||||||| ||||| || ||||||||  ||| 
gtttgttgttgaagaatctgccatttttatcttataaaaattgagat-aggaagccaat--ttaattggaaattcattact-----tgcagGTGTTAA-CCAGGATGAAACACCCCTACTCTATAGTCTAGTTTTTGGTGAAGGTGTTGTTAATGATGCCACATCTGTTGTGCTCTTTAATGCAATTGAAAA

upper sequence: GLYMA03G40290.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv14s0030g00710.t01 (Vitis vinifera), 3'ss of exon 5
gtttggaacaatatgtgcctttttccgcaacgttgcagcaaccaaggtgtcaatgctta--gtactgaacttataaat---gatgttgcagGTGCTAAACCAGGATGAGACACCTTTACTGTACAGTCTTGTATTTGGCGAGGGTGTTGTGAATGATGCTACATCTGTGGTGCTTTTCAATGCAATCAAAA
|| |||  || ||      | |  | || |        |||| | |||  ||||  ||     ||| ||| | |   |   |||| |||||||||| |||||||||||||| |||||||| || || || || ||||| ||||| ||||| ||||||||  |||| || || ||||||||||||||| | |
gtatggtgcattacaaagttatagcagcca------gacaacaatggtaccaatagttgtgaaactaaaccttttccttctgatgatgcagGTGCTTAACCAGGATGAGACGCCTTTACTTTATAGCCTGGTCTTTGGGGAGGGGGTTGTAAATGATGCAGCATCAGTTGTTCTTTTCAATGCAATCCAGA

upper sequence: GLYMA03G40290.1 (Glycine max), 3'ss of exon 5
lower sequence: PP1S113_117V6.1 (Physcomitrella patens), 3'ss of exon 4
-----------------------gtttggaacaatatgtgcctttttccgcaacgttgcagcaaccaaggtgtcaatgcttagtactgaacttataaatgatgttgcagGTGCTAAACCAGGATGAGACACCTTTACTGTACAGTCTTGTATTTGGCGAGGGTGTTGTGAATGATGCTACATCTGTGGTGCTTTTCAATGCAATCAAAA
                       |||  |   |||   ||  |  |||   || | |             |||||||  ||     ||   |  |   ||   ||||||||||| || ||||||||||| ||| | || |||||| | || ||||| || || || || ||||||||||| |||||||| || ||    ||  |  || 
attcatggtacctgaattggatggttcagggaaatgattggatacttctttaatgattttttt------ttgtcaattgttcactttg---tggtgcttgtctttgcagGTGCTCAATCAGGATGAGACCCCTCTGCTTTACAGTTTGGTGTTTGGAGAAGGAGTAGTCAATGATGCTACTTCTGTGGTTCTATTTCGGGCTGTTCAAT

upper sequence: GLYMA03G40290.1 (Glycine max), 3'ss of exon 5
lower sequence: PP1S169_48V6.1 (Physcomitrella patens), 3'ss of exon 5
----------------gtttggaacaatatgtgcctttttccgcaacgttgcagcaaccaaggtgtcaatgcttagtactgaacttataaatgatgt-tgcagGTGCTAAACCAGGATGAGACACCTTTACTGTACAGTCTTGTATTTGGCGAGGGTGTTGTGAATGATGCTACATCTGTGGTGCTTTTCAATGCAATCAAAA
                 || | ||   |      ||  ||  | |    |  |    | |   |  |  | | |  |  |    || ||  |  | | |||||||||| ||||| ||||| || ||| |||| |||||| | || ||||| || || || || ||||||||||| |||||||| || ||    ||  |  |||
actatataatacctgaattggtaattctggagaactgattttgtacttgtttaatttcta---ttcctttccatttttttttttttgtattttctttctgcagGTGCTGAACCAAGATGAAACCCCTCTACTTTACAGTTTGGTCTTTGGGGAAGGAGTCGTAAATGATGCTACTTCTGTGGTTCTGTTTCGAGCTGTTCAAA

upper sequence: GLYMA03G40290.1 (Glycine max), 3'ss of exon 5
lower sequence: PP1S207_23V6.2 (Physcomitrella patens), 3'ss of exon 6
--------------------------------------------------------------------------------------------------------------gtttggaacaatatgtgcctttttccgcaacgttgcagcaaccaaggtgtcaatgcttagtactgaacttataaatgatgttgcagGTGCTAAACCAGGATGAGACACCTTTACTGTACAGTCTTGTATTTGGCGAGGGTGTTGTGAATGATGCTACATCTGTGGTGCTTTTCAATGCAATCAAAA
                                                                                                               |||   | |  |  ||| || ||| |   | |   || ||    | | ||            |||     |   |  |  ||||||| || || ||||||||  ||||| |||| ||||||||||| ||||| || || ||||| ||||||||||| ||||| ||  | |||   ||  |  | |
gtgggctgcttttttcgtcactgtcattgaagcactgctgtcaagctcatgtagaaagtgtagagaagatttcaagctttcgtagattggcagagtgtctttgctccatgattttatagagaagctgcattcttctgtt-cttgaaagtaattgggttttcctctggcgtggttgacgacttgttttttaatgcagGTTCTTAATCAGGATGATTCACCTCTACTATACAGTCTTGTGTTTGGAGAAGGAGTTGTCAATGATGCTACCTCTGTAGTCTTATTCCGGGCTGTACAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttgcagcaaccaaggtgtcaatgcttagtactgaacttataaatgatgttgcagGTGCTAAACCAGGATGAGACACCTTTACTGTACAGTCTTGTATTTGGCGAGGGTGTTGTGAATGATGCTACATCTGTGGTGCTTTTCAATGCAATCAAAA
                                  aacttataaatgat  TA-rich tract