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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtggatttttatttcattggtatgcatgttatcttgttcttttctggtggctgatgttcaagttttaattaatttcagGGGGCCAATATTCTTGTAGATAATAAAGGATGCATAAAACTTGCAGACTTTGGGGCATCCAAACAAGTCGTTGAGCTG

Basic information

species Glycine max
transcript GLYMA03G39760.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G39760.1 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os08g32600.1 (Oryza sativa), 3'ss of exon 5
-------------------gtggatttttatttcattgg-tatgcatgttatcttg-ttct---tttctggtggctgatgttcaagttttaattaatttcagGGGGCCAATATTCTTGTAGATAATAAAGGATGCATAAAACTTGCAGACTTTGGGGCATCCAAACAAGTCGTTGAGCTG
                      || |||| || | |||  |     ||||   | | ||||   ||| |  ||   ||| | |   ||||   ||  ||||||| || ||||| ||||| ||||||||||||||||| ||  | |||||||||||||| ||||| ||||| |   || ||
gcatgaagagtattcgaattccgaattttgttgccttgaatgcttttgttgcgtgggttctaaatttgtaatgtgggat-tactgttttttcctatattcagGGAGCAAATATACTTGTTGATAATAAAGGATGCATTAAGTTAGCAGACTTTGGGGCCTCCAAGCAAGTGGAGAAGTTG

upper sequence: GLYMA03G39760.1 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os09g21510.1 (Oryza sativa), 3'ss of exon 5
-----------gtggatttttatttcat--tggtatgcatgttatcttgttcttttctg-----gtggctgatgttcaagtt--ttaattaatttcagGGGGCCAATATTCTTGTAGATAATAAAGGATGCATAAAACTTGCAGACTTTGGGGCATCCAAACAAGTCGTTGAGCTG
            || ||| | |   ||   |  |||| || |||| ||     ||  ||      |      | |||  |||  ||    |||| ||||| || || |||||||| ||||| ||||||||||| |||||||| || ||||||||||| || ||||| |   || ||
gtactcaaaatctgaattctgaacacacaataatatgtat-ttattttaccacttgttgtgctcattatgattattcctgttatttgtcaaattccagGGAGCGAACATTCTTGTTGATAACAAAGGATGCATTAAACTTGCTGATTTTGGGGCATCTAAGCAAGTGGCAAAGTTG

upper sequence: GLYMA03G39760.1 (Glycine max), 3'ss of exon 5
lower sequence: AC197029.3_FGT003 (Zea mays), 3'ss of exon 5
----------------------gtggatttttatttcattgg-tatgcatgttatcttgttcttttctggtggctgatgttcaagttttaattaatttcagGGGGCCAATATTCTTGTAGATAATAAAGGATGCATAAAACTTGCAGACTTTGGGGCATCCAAACAAGTCGTTGAGCTG
                       |  | |   |  || |||| | ||| |||| | |||     ||||  ||    |  || || ||||    |||||||||| || || |||||||||||||||||||| ||||| |||||||| || ||||||||||| || ||||| |   || ||
gtatgaacactgaagccttaacatataatggcagatctttggctttgcttgttctgttgaatgcttctaatga---accttgaaattttc-caaatttcagGGTGCAAACATTCTTGTAGATAATAAAGGGTGCATCAAACTTGCTGATTTTGGGGCATCTAAGCAAGTGGCAAAGTTG

upper sequence: GLYMA03G39760.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G098828_T01 (Zea mays), 3'ss of exon 5
---------gtggatttttatttcatt-----ggtatgcatgttatcttgttcttttctggtgg-----ctgatgttc----aagttttaattaatttcagGGGGCCAATATTCTTGTAGATAATAAAGGATGCATAAAACTTGCAGACTTTGGGGCATCCAAACAAGTCGTTGAGCTG
          || | | ||| |  ||      | |||      |   ||||||| ||    ||      || |||  |    || ||||    |||||||||| || || |||||||| ||||||||||| ||||| |||||||| || ||||||||||| || ||||| |   || ||
gtatgcacgttgaagtcttaatatataatgcagatatttggccttgtttgttctgttgcaatgcttattctaatgaacttgaaaattttgccaaatttcagGGTGCAAACATTCTTGTTGATAATAAAGGGTGCATCAAACTTGCTGATTTTGGGGCATCTAAGCAAGTTGCAAAGTTG

upper sequence: GLYMA03G39760.1 (Glycine max), 3'ss of exon 5
lower sequence: AT1G09000.1 (Arabidopsis thaliana), 3'ss of exon 5
--------gtggatttttatttcattggtatgcatgttatcttgttcttttctggtggctgatgttcaagttttaattaatttcagGGGGCCAATATTCTTGTAGATAATAAAGGATGCATAAAACTTGCAGACTTTGGGGCATCCAAACAAGTCGTTGAGCTG
         |   |   || || ||  ||    |   | ||  || |||  |     |   || |     || ||  |  | ||||||||| ||||| ||||| ||||||||||||||||| || ||||| || ||||| |||||||||||||| | |||| ||
gtaacaatttttctccatactttataagtgcttacaatctcgagtccttacccatgagactatatgt---ttctatgttttctcagGGGGCTAATATCCTTGTGGATAATAAAGGATGCATTAAGCTTGCTGATTTTGGTGCATCCAAACAAGTAGCTGAGTTG

upper sequence: GLYMA03G39760.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv14s0128g00430.t01 (Vitis vinifera), 3'ss of exon 5
------------------------gtggatttttatttcattggtatgcatgttatcttgttcttttctggtggctgatgttcaagttttaattaatttcagGGGGCCAATATTCTTGTAGATAATAAAGGATGCATAAAACTTGCAGACTTTGGGGCATCCAAACAAGTCGTTGAGCTG
                            | | | | || |||      | | ||   |  ||| ||  | |  | |||  |  |  ||| |   |  || ||||||| || || || || ||||||||||||||||| ||||||||||| ||||| || ||||| || || || ||||||
gtgctgtctctctttctccccctctctcactctcactt-attctctctcttatttcttctttccttcttaggagatgacatgtatttttgacccacatttagGGGGCAAACATCCTCGTCGATAATAAAGGATGCATTAAACTTGCAGATTTTGGTGCTTCCAAGCAGGTTGTGGAGCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcatgttatcttgttcttttctggtggctgatgttcaagttttaattaatttcagGGGGCCAATATTCTTGTAGATAATAAAGGATGCATAAAACTTGCAGACTTTGGGGCATCCAAACAAGTCGTTGAGCTG
                                           aattaat  putative branch site (score: 3)
                              atgttcaagttttaat  TA-rich tract