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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttgttttgttgcttagcacatctgctattctgtttacaagtaggactgcaatttaaagagttgttttcccatgggctgtgaactgtgaccatgaaatgatgaagtgtaaaattatgaatatgttgtagtcttgcagttaacattctgtaaactgacatctgtctgaaaccatataattacagGGAATACATGGTTGATCTTATTGGGAAGCCGGGTTGCTTATGCAAGCCTGATTCCTTGATCAATGGTCCATCCTCCATTTCATTTTCTTCACCCTTGCGC

Basic information

species Glycine max
transcript GLYMA03G34890.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G34890.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv08s0007g03910.t01 (Vitis vinifera), 3'ss of exon 4
gtatttgttttgttgcttagcacatctgctattctgtttacaagtaggactgcaatttaaagagttgttttcccatgggctgtgaactgtgaccatgaaatgatgaagtgtaaaattatgaatatgttgtagtcttgca---gttaacattctgtaaactgacatctgtctgaaaccatataattacagGGAATACATGGTTGATCTTATTGGGAAGCCGGGTTGCTTATGCAAGCCTGATTCCTTGATCAATGGTCCATCCTCCATTTCATTTTCTTCACCCTTGCGC
                                                                                              || | ||  |||| || |   |    |  |||    |   ||| |    ||| ||  || || |   |  || |  |  ||   ||| | | |||||| |   | |||||| |  |||| ||||| || ||||||||| |||||||||| ||| ||||||||||| | ||||| ||| ||||||| || ||||||
-----------------------------------------------------------------------------------------cttgtatcatatattgaattgcagtctctgtagcatgcctcatcattgaatatattagcaaactatacaaacatctcagagtataattgtattactgcagGGAGTTTCTAGTTGATTTGGTTGGCAAGCCAGGGTGCTTATGCGAGCCTGATTCTTTGCTCAATGGTCCAGCTTCCATCTCAATTTCTTCCCCATTGCGC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtcttgcagttaacattctgtaaactgacatctgtctgaaaccatataattacagGGAATACATGGTTGATCTTATTGGGAAGCCGGGTTGCTTATGCAAGCCTGATTCCTTGATCAATGGTCCATCCTCCATTTCATTTTCTTCACCCTTGCGC
                      aactgac  putative branch site (score: 2)
                                      aaaccatataatta  TA-rich tract