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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcaagtctcaatcatcaaaagagaaacttactttatggttcatttatgaatatctttcttatgatgagttaagtagatatttacctcttctttcctatttcagAACAAAGATGGTGCTGGTGATTCTTCTTTCCCAGTTGTAAAGGATCAAACTCAATTTTCGGTTGCCCATGCACGTTACAGTAAG

Basic information

species Glycine max
transcript GLYMA03G33740.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G33740.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv08s0040g01960.t01 (Vitis vinifera), 3'ss of exon 5
gcaagtctcaatcatcaaaagagaaacttactttatggttcatttatgaatatctttc--ttatg--atgagttaagtaga-tatttacctcttctttcctatttcagAACAAAGATGGTGCTGGTGATTCTTCTTTCCCAGTTGTAAAGGATCAAACTCAATTTTCGGTTGCCCATGCACGTTACAGTAAG
||||| |||||  | ||  ||| | | |     | |      ||||  | | |  |||  ||||   || |  | | | || | | ||     | ||| |||     || |||||| ||||| |||||||| || || || ||| | |||||||||||||||||||| ||||| ||||| ||||| ||||||
gcaagcctcaaata-cagtagaaatattgttcatttcagctgtttaacattcttattccattattctataaactgactggagtgtgtaatcaattttttcta-----gAGCAAAGAAGGTGCAGGTGATTCATCATTTCCTGTTATCAAGGATCAAACTCAATTTTCTGTTGCACATGCGCGTTATAGTAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatatctttcttatgatgagttaagtagatatttacctcttctttcctatttcagAACAAAGATGGTGCTGGTGATTCTTCTTTCCCAGTTGTAAAGGATCAAACTCAATTTTCGGTTGCCCATGCACGTTACAGTAAG
                             tatttacctcttcttt  CT-rich tract
                    ttaagtagatattta  TA-rich tract