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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagaattcgcgcgaatcatgcttgattgcatttgtgggaatatgcgcagaatacaataacatctgattttggcgtctttttgttgtgaaatctgcagCTTGCTCATCAAGGTTCTTTCTCACAAAATGTTACTTACCCGAATTCTCAG

Basic information

species Glycine max
transcript GLYMA03G33490.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14011130|gb|BG726061.1|BG726061
EST:     GTGGAGACTCATCTGCTAAGAGAGATGTTCAGCCAAGTCCTAATGCTCAG                         CTTGCTCATCAAGGTTCTTTCTCACAAAATGTTACTTACCCGAATTCTCAG
genomic: GTGGAGACTCATCTGCTAAGAGAGATGTTCAGCCAAGTCCTAATGCTCAGgtagaattcg ... aaatctgcagCTTGCTCATCAAGGTTCTTTCTCACAAAATGTTACTTACCCGAATTCTCAG
EST: gi|8826311|gb|BE210041.1|BE210041
EST:     GTGGAGACTCATCTGCTAAGAGAGATGTTCAGCCAAGTCCTAATGCTCAG                         CTTGCTCATCAAGGTTCTTTCTCACAGAATGTTACTTACCCGAATTCTCAG
genomic: GTGGAGACTCATCTGCTAAGAGAGATGTTCAGCCAAGTCCTAATGCTCAGgtagaattcg ... aaatctgcagCTTGCTCATCAAGGTTCTTTCTCACAAAATGTTACTTACCCGAATTCTCAG
EST: gi|21677121|gb|BQ629472.1|BQ629472
EST:     GTGGAGACTCATCTGCTAAGAGAGATGTTCAGCCAAGTCCTAATGCTCAG                         CTTGCTCATCAAGGTTCTTTCTCACAAAATGTTACTTACCCGAATTCTCAG
genomic: GTGGAGACTCATCTGCTAAGAGAGATGTTCAGCCAAGTCCTAATGCTCAGgtagaattcg ... aaatctgcagCTTGCTCATCAAGGTTCTTTCTCACAAAATGTTACTTACCCGAATTCTCAG
EST: gi|5605926|gb|AI900024.1|AI900024
EST:     GTGGAGACTCATCTGCTAAGAGAGATGTTCAGCCAAGTCCTAATGCTCAG                         CTTGCTCATCAAGGCTCTTTCTCACANCATGTTACTTACTCCGA-TTCTCA
genomic: GTGGAGACTCATCTGCTAAGAGAGATGTTCAGCCAAGTCCTAATGCTCAGgtagaattcg ... aaatctgcagCTTGCTCATCAAGGTTCTTTCTCACAAAATGTTACTTAC-CCGAATTCTCA
EST: gi|16346723|gb|BI972318.1|BI972318
EST:     GTGGAGACTCATCTGCTAAGAGAGATGTTCAGCCAAGTCCTAATGCTCAG                         CTTGCTCATCAAGGGTCTTTCTCACAAAAT
genomic: GTGGAGACTCATCTGCTAAGAGAGATGTTCAGCCAAGTCCTAATGCTCAGgtagaattcg ... aaatctgcagCTTGCTCATCAAGGTTCTTTCTCACAAAAT
EST: gi|7285143|gb|AW597630.1|AW597630
EST:     GTGGAGACTCATCTGCTAAGAGAGATGTTCAGCCAAGTCCTAATGCTCAG                         CTTGCTCATCAAGGTTCTTTCTCACAAAATGTTACTTACCCG
genomic: GTGGAGACTCATCTGCTAAGAGAGATGTTCAGCCAAGTCCTAATGCTCAGgtagaattcg ... aaatctgcagCTTGCTCATCAAGGTTCTTTCTCACAAAATGTTACTTACCCG
EST: gi|5761187|gb|AI966550.1|AI966550
EST:     CTGGAGACTCATCTGCTCTGAGAGATGTTCAGCCAAGTCCTAATGCTCAG                         CTTGCTCATCAAGGTTCTTTCTCACAAAATGTTACTTACCCGAATTCTCAG
genomic: GTGGAGACTCATCTGCTAAGAGAGATGTTCAGCCAAGTCCTAATGCTCAGgtagaattcg ... aaatctgcagCTTGCTCATCAAGGTTCTTTCTCACAAAATGTTACTTACCCGAATTCTCAG
EST: gi|18730588|gb|BM525962.1|BM525962
EST:     GTGGAGACTCATCTGCTAAGAGAGATGTTCAGCCAAGTCCTAATGCTCAG                         CTTGCTCATCAAGGTTCTTTCTCACAAAATGTTACTTACCCG
genomic: GTGGAGACTCATCTGCTAAGAGAGATGTTCAGCCAAGTCCTAATGCTCAGgtagaattcg ... aaatctgcagCTTGCTCATCAAGGTTCTTTCTCACAAAATGTTACTTACCCG
EST: gi|7029546|gb|AW459387.1|AW459387
EST:     GTGGAGACTCATCTGCTAAGAGAGATGTTCAGCCAAGTCCTAATGCTCAG                         CTTGCTCATCAAGGTTCTTTCTCACAAAATGTTACTTACCCGAATTCTCAG
genomic: GTGGAGACTCATCTGCTAAGAGAGATGTTCAGCCAAGTCCTAATGCTCAGgtagaattcg ... aaatctgcagCTTGCTCATCAAGGTTCTTTCTCACAAAATGTTACTTACCCGAATTCTCAG
EST: gi|8284382|gb|BE021941.1|BE021941
EST:     GTGGAGACTCATCTGCTAAGAGAGATGTTCAGCCAAGTCCTAATGCTCAG                         CTTGCTCATCAAGGTTCTTTCTCACAAAATGGTACTTACCCG
genomic: GTGGAGACTCATCTGCTAAGAGAGATGTTCAGCCAAGTCCTAATGCTCAGgtagaattcg ... aaatctgcagCTTGCTCATCAAGGTTCTTTCTCACAAAATGTTACTTACCCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcgcagaatacaataacatctgattttggcgtctttttgttgtgaaatctgcagCTTGCTCATCAAGGTTCTTTCTCACAAAATGTTACTTACCCGAATTCTCAG
       aatacaataa  TA-rich tract