1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtttgattttaacagtcactaatcttattggttctgatgcaacgactctgcaatttcaattggctgtagtttcagtagtcagaattgttttataacatctttgcttgtaagctgagttttggttaccttggttcttgccagCCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAGATCACAGAGTCGTGAGCCCTCCAAGATAAGGAAGCATAGTGCATCACCT
species | Glycine max |
transcript | GLYMA03G33270.3 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAG CCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAGEST: gi|208156572|gb|GD956854.1|GD956854
genomic: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAGgtttgatttt ... ttcttgccagCCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAG
EST: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAG CCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAGEST: gi|208294148|gb|GE096067.1|GE096067
genomic: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAGgtttgatttt ... ttcttgccagCCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAG
EST: GATCGAAGCTACAGCCGAGACCACAGCTACAG CCGATCGAAATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAGEST: gi|207693992|gb|GD675067.1|GD675067
genomic: GATCGAAGCTACAGCCGAGACCACAGCTACAGgtttgatttt ... ttcttgccagCCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAG
EST: GGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAG CCGATCGAGATTTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAGEST: gi|298199246|gb|HO042609.1|HO042609
genomic: -GTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAGgtttgatttt ... ttcttgccagCCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAG
EST: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAG CCGATCGAGATCTCCCGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAGEST: gi|208254682|gb|GE051228.1|GE051228
genomic: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAGgtttgatttt ... ttcttgccagCCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAG
EST: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAG CCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAGEST: gi|254344581|gb|GR855452.1|GR855452
genomic: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAGgtttgatttt ... ttcttgccagCCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAG
EST: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAG CCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAGEST: gi|208318139|gb|GE114078.1|GE114078
genomic: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAGgtttgatttt ... ttcttgccagCCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAG
EST: CGTCGTGGAAGAAGCAGGGATCGAAGCAACAGCCGAGACCACAGCTACAG CCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTEST: gi|207839844|gb|GD810037.1|GD810037
genomic: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAGgtttgatttt ... ttcttgccagCCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTT
EST: CGTCGTGGAAGAAGCAGGGATCGAAGCAACAGCCGAGACCACAGCTACAG CCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTEST: gi|207765392|gb|GD738171.1|GD738171
genomic: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAGgtttgatttt ... ttcttgccagCCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTT
EST: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAG CCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTEST: gi|208022923|gb|GD820933.1|GD820933
genomic: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAGgtttgatttt ... ttcttgccagCCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTT
EST: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAG CCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAGEST: gi|254344582|gb|GR855453.1|GR855453
genomic: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAGgtttgatttt ... ttcttgccagCCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAG
EST: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAG CCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAGEST: gi|31310837|gb|CD396040.1|CD396040
genomic: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAGgtttgatttt ... ttcttgccagCCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAG
EST: GCAGGGATCTAAGCTACAGCCGAGACCACAGCTACAG CCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAGEST: gi|208276808|gb|GE073395.1|GE073395
genomic: GCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAGgtttgatttt ... ttcttgccagCCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAG
EST: CGTCGTGGAAGAAGCCGGGATCGAAGCTACAGCCGAGACCGCAACTACAG CCGATCGAGATCTCCAGTCAGAAGAGAACGAAGCCCAGTTTEST: gi|16343628|gb|BI969223.1|BI969223
genomic: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAGgtttgatttt ... ttcttgccagCCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTT
EST: AGCTACAGCCGAGACCACAGCTACAG CCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAGEST: gi|10256190|gb|BE823956.1|BE823956
genomic: AGCTACAGCCGAGACCACAGCTACAGgtttgatttt ... ttcttgccagCCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAG
EST: CGTCGTNNNAGNNGCAGGGANCGAAGCTACAGCCGAGACCACAGCTACAG CCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAGEST: gi|7692938|gb|AW761037.1|AW761037
genomic: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAGgtttgatttt ... ttcttgccagCCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAG
EST: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAG CCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAGEST: gi|193626318|gb|FK572682.1|FK572682
genomic: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAGgtttgatttt ... ttcttgccagCCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAG
EST: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAG CCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAGEST: gi|208233570|gb|GE031451.1|GE031451
genomic: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAGgtttgatttt ... ttcttgccagCCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAG
EST: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAG CCGATCGAGATCTCCT
genomic: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAGgtttgatttt ... ttcttgccagCCGATCGAGATCTCCT
gttttataacatctttgcttgtaagctgagttttggttaccttggttcttgccagCCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAGATCACAGAGTCGTGAGCCCTCCAAGATAAGGAAGCATAGTGCATCACCT
ttataac putative branch site (score: 2)
ttcttgcc putative PPT
ataacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgattttaacagtcactaatcttattggttctgatgcaacgactctgcaatttcaattggctgtagtttcagtagtcagaattgttttataacatctttgcttgtaagctgagttttggttaccttggttcttgccagCCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAGATCACAGAGTCGTGAGCCCTCCAAGATAAGGAAGCATAGTGCATCACCT
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