1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaggccataatctaatttccaaacttctacctcgtgttgatttgctcttaacatggttattgctctctaatgggttttatgagctttaaatcattgatgtcaatttgaattgttctaacagCCAACGTGGACGGAGTCTTTCACGTTCACCAGTAAGGTCACGTTCTCCTCGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAG
species | Glycine max |
transcript | GLYMA03G33270.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GAAAGAGGTCATATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTTGAG CCAACGTGGACGGAGTCTTTCACGTTCACCAGTAAGGTCACGTTCTCCTCGEST: gi|208156572|gb|GD956854.1|GD956854
genomic: GAAAGAGGTCATATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTTGAGgtaggccata ... gttctaacagCCAACGTGGACGGAGTCTTTCACGTTCACCAGTAAGGTCACGTTCTCCTCG
EST: GAAAGAGGTCATATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTTGAG CCAACGTGGACGGAGTCTTTCACGTTCACCAGTAAGGTCACGTTCTCCTCGEST: gi|254344581|gb|GR855452.1|GR855452
genomic: GAAAGAGGTCATATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTTGAGgtaggccata ... gttctaacagCCAACGTGGACGGAGTCTTTCACGTTCACCAGTAAGGTCACGTTCTCCTCG
EST: GAAAGAGGTCATATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTTGAG CCAACGTGGACGGAGTCTTTCACGTTCACCAGTAAGGTCACGTTCTCCTCGEST: gi|192331339|gb|FK023808.1|FK023808
genomic: GAAAGAGGTCATATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTTGAGgtaggccata ... gttctaacagCCAACGTGGACGGAGTCTTTCACGTTCACCAGTAAGGTCACGTTCTCCTCG
EST: GAAAGAGGTCATATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTTGAG CCAACGTGGACGGAGTCTTTCACGTTCACCAGTAAGGTCACGTTCTCCTCGEST: gi|151411040|gb|EV280851.1|EV280851
genomic: GAAAGAGGTCATATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTTGAGgtaggccata ... gttctaacagCCAACGTGGACGGAGTCTTTCACGTTCACCAGTAAGGTCACGTTCTCCTCG
EST: GAAAGAGGTCATATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTTGAG CCAACGTGGACGGAGTCTTTCACGTTCACCAGTAAGGTCACGTTCTCCTCGEST: gi|298199246|gb|HO042609.1|HO042609
genomic: GAAAGAGGTCATATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTTGAGgtaggccata ... gttctaacagCCAACGTGGACGGAGTCTTTCACGTTCACCAGTAAGGTCACGTTCTCCTCG
EST: GAAAGAGGTCATATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTTGAG CCAACGTGGACGGAGTCTTTCACGTTCACCAGTAAGGTCACGTTCTCCTCGEST: gi|26058479|gb|CA801393.1|CA801393
genomic: GAAAGAGGTCATATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTTGAGgtaggccata ... gttctaacagCCAACGTGGACGGAGTCTTTCACGTTCACCAGTAAGGTCACGTTCTCCTCG
EST: GAAAGAGGTCATATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTTGAG CCAACGTGGACGGAGTCTTTCACGTTCACCAGTAAGGTCACGTTCTCCTCGEST: gi|193684971|gb|FK626495.1|FK626495
genomic: GAAAGAGGTCATATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTTGAGgtaggccata ... gttctaacagCCAACGTGGACGGAGTCTTTCACGTTCACCAGTAAGGTCACGTTCTCCTCG
EST: GAAAGAGGTCATATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTTGAG CCAACGTGGACGGAGTCTTTCACGTTCACCAGTAAGGTCACGTTCTCCTCGEST: gi|193455254|gb|FK419693.1|FK419693
genomic: GAAAGAGGTCATATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTTGAGgtaggccata ... gttctaacagCCAACGTGGACGGAGTCTTTCACGTTCACCAGTAAGGTCACGTTCTCCTCG
EST: GAAAGAGGTCATATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTTGAG CCAACGTGGACGGAGTCTTTCACGTTCACCAGTAAGGTCACGTTCTCCTCGEST: gi|254332768|gb|GR846599.1|GR846599
genomic: GAAAGAGGTCATATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTTGAGgtaggccata ... gttctaacagCCAACGTGGACGGAGTCTTTCACGTTCACCAGTAAGGTCACGTTCTCCTCG
EST: GAAAGAGGTCATATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTTGAG CCAACGTGGACGGAGTCTTTCACGTTCACCAGTAAGGTCACGTTCTCCTCGEST: gi|120534327|gb|EH262460.1|EH262460
genomic: GAAAGAGGTCATATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTTGAGgtaggccata ... gttctaacagCCAACGTGGACGGAGTCTTTCACGTTCACCAGTAAGGTCACGTTCTCCTCG
EST: GAAAGAGGTCATATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTTGAG CCAACGTGGACGGAGTCTTTCACGTTCACCAGTAAGGTCACGTTCTCCTCGEST: gi|120528988|gb|EH257122.1|EH257122
genomic: GAAAGAGGTCATATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTTGAGgtaggccata ... gttctaacagCCAACGTGGACGGAGTCTTTCACGTTCACCAGTAAGGTCACGTTCTCCTCG
EST: GAAAGAGGTCATATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTTGAG CCAACGTGGACGGAGTCTTTCACGTTCACCAGTAAGGTCACGTTCTCCTCGEST: gi|192320086|gb|FK014170.1|FK014170
genomic: GAAAGAGGTCATATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTTGAGgtaggccata ... gttctaacagCCAACGTGGACGGAGTCTTTCACGTTCACCAGTAAGGTCACGTTCTCCTCG
EST: GAAAGAGGTCATATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTTGAG CCAACGTGGACGGAGTCTTTCACGTTCACCAGTAAGGTCACGTTCTCCTCGEST: gi|6846249|gb|AW348539.1|AW348539
genomic: GAAAGAGGTCATATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTTGAGgtaggccata ... gttctaacagCCAACGTGGACGGAGTCTTTCACGTTCACCAGTAAGGTCACGTTCTCCTCG
EST: CTGTAAGAACAGTNNNNAAAAGTTGAG CCAACGTGGACGGAGNCTTTCACGTTCACCAGTAAGGTCACGTTCTCCTCGEST: gi|208318139|gb|GE114078.1|GE114078
genomic: CTGTAAGAACAGTCCCAAAAAGTTGAGgtaggccata ... gttctaacagCCAACGTGGACGGAGTCTTTCACGTTCACCAGTAAGGTCACGTTCTCCTCG
EST: AAAGAGGTCATATAGAAAAGAACTGTAAGAACTAGTCCCAAAAAGTTGAG CCAACGTGGACGGAGTCTTTCACGTTCACCAGTAAGGTCACGTTCTCCTCGEST: gi|192299767|gb|FG993317.1|FG993317
genomic: AAAGAGGTCATATAGAAAAGAACTGTAAGAAC-AGTCCCAAAAAGTTGAGgtaggccata ... gttctaacagCCAACGTGGACGGAGTCTTTCACGTTCACCAGTAAGGTCACGTTCTCCTCG
EST: GAAAGAGGTCATATAGAAAAGAACTGTAAGAACAGACCCAAAAAGTTGAG CCAACGTGGACGGAGTCTTTCACGTTCACCAGTAAGGTCACGTTCTCCTCGEST: gi|207839844|gb|GD810037.1|GD810037
genomic: GAAAGAGGTCATATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTTGAGgtaggccata ... gttctaacagCCAACGTGGACGGAGTCTTTCACGTTCACCAGTAAGGTCACGTTCTCCTCG
EST: -AAGAGGTCAGTATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTTGAG CCAACGTGGACGGAGTCTTTCACGTTCACCAGTAAGGTCACGTTCTCCTCGEST: gi|192328414|gb|FK020125.1|FK020125
genomic: AAAGAGGTCA-TATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTTGAGgtaggccata ... gttctaacagCCAACGTGGACGGAGTCTTTCACGTTCACCAGTAAGGTCACGTTCTCCTCG
EST: GAAAGAGGTCATATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTTGAG CCAACGTGGACGGAGTCTTTCACGTTCACCAGTAAGGTCACGTTCTCCTCGEST: gi|207765392|gb|GD738171.1|GD738171
genomic: GAAAGAGGTCATATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTTGAGgtaggccata ... gttctaacagCCAACGTGGACGGAGTCTTTCACGTTCACCAGTAAGGTCACGTTCTCCTCG
EST: GAAAGAGGTCATATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTTGAG CCAACGTGGACGGAGTCTTTCACGTTCACCAGTAAGGTCACGTTCTCCTCGEST: gi|208022923|gb|GD820933.1|GD820933
genomic: GAAAGAGGTCATATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTTGAGgtaggccata ... gttctaacagCCAACGTGGACGGAGTCTTTCACGTTCACCAGTAAGGTCACGTTCTCCTCG
EST: AAAGAGGTCATATAAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTTGAG CCAACGTGGACGGAGTCTTTCACGTTCACCAGTAAGGTCACGTTCTCCTCGEST: gi|7146149|gb|AW508071.1|AW508071
genomic: AAAGAGGTCATAT-AGAAAAGAACTGTAAGAACAGTCCCAAAAAGTTGAGgtaggccata ... gttctaacagCCAACGTGGACGGAGTCTTTCACGTTCACCAGTAAGGTCACGTTCTCCTCG
EST: GAAAGAGGTCATATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTTGAG CCAACGTGGACGGAGTCTTTCACGTTCACCAGTAAGGTCACGTTCTCCTCGEST: gi|208276808|gb|GE073395.1|GE073395
genomic: GAAAGAGGTCATATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTTGAGgtaggccata ... gttctaacagCCAACGTGGACGGAGTCTTTCACGTTCACCAGTAAGGTCACGTTCTCCTCG
EST: GAAAGAGGTCATATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTTGAG CCAACGTGGACGGAGTCTTTCACGTTCACCAGTAAGGTCACGTTCTCCTCGEST: gi|120534599|gb|EH262732.1|EH262732
genomic: GAAAGAGGTCATATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTTGAGgtaggccata ... gttctaacagCCAACGTGGACGGAGTCTTTCACGTTCACCAGTAAGGTCACGTTCTCCTCG
EST: GAAAGAGGTCATATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTTGAG CCAACGTGGACGGAGTCTTTCACGTTCACCAGTAAGGTCACGTTCTCCTCGEST: gi|151398264|gb|EV268142.1|EV268142
genomic: GAAAGAGGTCATATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTTGAGgtaggccata ... gttctaacagCCAACGTGGACGGAGTCTTTCACGTTCACCAGTAAGGTCACGTTCTCCTCG
EST: GAAAGAGGTCATATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTTGAG CCAACGTGGACGGAGTCTTTCACGTTCACCAGTAAGGTCACGTTCTCCTCGEST: gi|7692938|gb|AW761037.1|AW761037
genomic: GAAAGAGGTCATATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTTGAGgtaggccata ... gttctaacagCCAACGTGGACGGAGTCTTTCACGTTCACCAGTAAGGTCACGTTCTCCTCG
EST: GAAAGAGGTCATATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTTGAG CCAACGTGGACGGAGTCTTTCACGTTCACCAGTAAGGTCACGTTCTCCTCGEST: gi|193626318|gb|FK572682.1|FK572682
genomic: GAAAGAGGTCATATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTTGAGgtaggccata ... gttctaacagCCAACGTGGACGGAGTCTTTCACGTTCACCAGTAAGGTCACGTTCTCCTCG
EST: GAAAGAGGTCATATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTTGAG CCAACGTGGACGGAGTCTTTCACGTTCACCAGTAAGGTCACGTTCTCCTCGEST: gi|208233570|gb|GE031451.1|GE031451
genomic: GAAAGAGGTCATATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTTGAGgtaggccata ... gttctaacagCCAACGTGGACGGAGTCTTTCACGTTCACCAGTAAGGTCACGTTCTCCTCG
EST: GAAAGAGGTCATATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTTGAG CCAACGTGGACGGAGTCTTTCACGTTCACCAGTAAGGTCACGTTCTCCTCGEST: gi|16347699|gb|BI973294.1|BI973294
genomic: GAAAGAGGTCATATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTTGAGgtaggccata ... gttctaacagCCAACGTGGACGGAGTCTTTCACGTTCACCAGTAAGGTCACGTTCTCCTCG
EST: GAAAGAGGTCATATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTTGAG CCAACGTGGACGGAGTCTTTCACGTTCACCAGTAAGGTCACGTTCTCCTCGEST: gi|193320057|gb|FK284318.1|FK284318
genomic: GAAAGAGGTCATATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTTGAGgtaggccata ... gttctaacagCCAACGTGGACGGAGTCTTTCACGTTCACCAGTAAGGTCACGTTCTCCTCG
EST: GAAAGAGGTCATATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTTGAG CCAACGTGGACGGAGTCTTTCACGTTCACCAGTAAGGTCACGTTCTCTTCG
genomic: GAAAGAGGTCATATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTTGAGgtaggccata ... gttctaacagCCAACGTGGACGGAGTCTTTCACGTTCACCAGTAAGGTCACGTTCTCCTCG
ctaatgggttttatgagctttaaatcattgatgtcaatttgaattgttctaacagCCAACGTGGACGGAGTCTTTCACGTTCACCAGTAAGGTCACGTTCTCCTCGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAG
ttgttct CT-rich tract
tttaaatcattgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggccataatctaatttccaaacttctacctcgtgttgatttgctcttaacatggttattgctctctaatgggttttatgagctttaaatcattgatgtcaatttgaattgttctaacagCCAACGTGGACGGAGTCTTTCACGTTCACCAGTAAGGTCACGTTCTCCTCGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC