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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtatttattgatatttgtaatttaattaaatgacaggaatgtctattcaatcatgcttaaatattctgtgagttaaaaaacttgcggatggatttaaatggtttcaacagGTATTTGAGAAGCTTGGACCAAGCTTATATGATTTTCTCCGCAAAAACAGCTATCGTTCTTTTCCTATTGATCTTGTTCGGGAGTTTGGCAGACAACTTT

Basic information

species Glycine max
transcript GLYMA03G33100.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G33100.1 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os01g62080.1 (Oryza sativa), 3'ss of exon 7
gtaagtatttattgatatttgtaatttaattaaatgacaggaatgtctattcaatcatgcttaaatattctgtgagttaaaaaacttgcggatggatttaaatggtttcaacagGTATTTGAGAAGCTTGGACCAAGCTTATATGATTTTCTCCGCAAAAACAGCTATCGTTCTTTTCCTATTGATCTTGTTCGGGAGTTTGGCAGACAACTTT
                              ||| | ||| |    || |   |  | | |||  || || ||   | | | ||  ||     || |||  | |   ||   ||||||||||||| ||| ||||||||||||||||| || ||||| || || || |||||| | ||||| || || ||||||||||| |||| ||||||| | |
-----------------------------gtaagt-acatgtgcatcaaga-aggcttcctttcatgttttggatggtcagaa-tttaatattgaatt--actaactttgtcagGTATTTGAGAGGCTCGGACCAAGCTTATATGACTTCCTCCGAAAGAATAGTTATCGTGCATTTCCGATCGACCTTGTTCGGGAATTTGCCAGACAAATAT

upper sequence: GLYMA03G33100.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G386991_T01 (Zea mays), 3'ss of exon 5
gtaagtatttattgatatttgtaatttaattaaatgacaggaatgtctattcaatcatgcttaaatattctgtgagttaaaaaacttgcgg-atggatttaaatggtttcaacagGTATTTGAGAAGCTTGGACCAAGCTTATATGATTTTCTCCGCAAAAACAGCTATCGTTCTTTTCCTATTGATCTTGTTCGGGAGTTTGGCAGACAACTTT
                              ||| ||| |     ||| |       || ||| | |  | | |||  | |  |  ||  |  || || || | || | ||  |||||||||||||||||||| |||||| ||||||| ||||| || || || ||||| ||||| ||||||||||| ||||| || || |||| ||||||| | |
-----------------------------gtaagtga-atatgcgtcaagaaggctatactttacttgtttttga--tgatcaggttatgatattgaattga-tgatctcttcagGTATTTGAGAAGCTTGGGCCAAGCCTATATGACTTTCTGCGAAAGAATAGCTACCGTTCATTTCCTATTGACCTTGTCCGAGAATTTGCCAGACAAATAT

upper sequence: GLYMA03G33100.1 (Glycine max), 3'ss of exon 5
lower sequence: AT3G53570.4 (Arabidopsis thaliana), 3'ss of exon 7
gtaagtatttattgatatttgtaatttaattaaatgacaggaatgt-ctattcaatcatgcttaaatattctgtgagttaaaa-aacttgcggatggatttaaatggtttcaacagGTATTTGAGAAGCTTGGACCAAGCTTATATGATTTTCTCCGCAAAAACAGCTATCGTTCTTTTCCTATTGATCTTGTTCGGGAGTTTGGCAGACAACTTT
    |||  |  || ||  | || || |      |||  ||||  | | |||   ||| ||  |||| || |||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||| |||||||||||||||
----gtaagtgctgttacctttatttgacaagtttgaggggaaaatgcaatttcttcacgcccaaatgttatgtgagttaaaagaacttgcgcatgggtttaaatggtttcaacagGTATTTGAGAAGCTTGGACCAAGCTTATATGATTTTCTCCGCAAAAACAGCTACCGTTCATTTCCCATTGATCTTGTTCGGGAGCTTGGCAGACAACTTT

upper sequence: GLYMA03G33100.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv08s0040g02640.t01 (Vitis vinifera), 3'ss of exon 5
gtaagtatttattgatatttgtaatttaattaaatgacagg---aatgtctattcaatcatgcttaaatattctgtgagttaaaaaacttgcggatggatttaaatggtttcaacagGTATTTGAGAAGCTTGGACCAAGCTTATATGATTTTCTCCGCAAAAACAGCTATCGTTCTTTTCCTATTGATCTTGTTCGGGAGTTTGGCAGACAACTTT
|||||||||||||| || |||| |||| ||| | |   |||   |||   | ||   |  ||| |||||||||||||||||||||| |||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
gtaagtatttattggtacttgtgatttgattcatttgaaggggcaatccatgttgttttgtgcctaaatattctgtgagttaaaaa-cttgcggatggatttaaatggtttgagcagGTCTTTGAGAAGCTTGGACCAAGCTTATACGATTTTCTCCGCAAAAACAGCTACCGTTCTTTTCCTATTGATCTTGTTCGGGAGCTTGGCAGACAACTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttaaatattctgtgagttaaaaaacttgcggatggatttaaatggtttcaacagGTATTTGAGAAGCTTGGACCAAGCTTATATGATTTTCTCCGCAAAAACAGCTATCGTTCTTTTCCTATTGATCTTGTTCGGGAGTTTGGCAGACAACTTT
                 ttaaaaaactt  TA-rich tract