1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tactaatattgttatatttccaaaggacaaaaaaaagatttttttttttcaaatatcacctttgagcaatttgttaatgtaacttgattaaatatttcagGTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAATCGGGTCTTATCAAG
species | Glycine max |
transcript | GLYMA03G33000.7 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GGCCTGGTGCTCCAACGATCTTCAATTGT GTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAAEST: gi|207840938|gb|GD810193.1|GD810193
genomic: GGCCTGGTGCTCCAACGATCTTCAATTGTgtaagtctgc ... aatatttcagGTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAA
EST: GGCCTGGTGCTCCAACGATCTTCAATTGT GTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAAEST: gi|207831666|gb|GD801720.1|GD801720
genomic: GGCCTGGTGCTCCAACGATCTTCAATTGTgtaagtctgc ... aatatttcagGTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAA
EST: CTGGTGCTCCTAACGATTCTTTCAATTGT GTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAEST: gi|193320747|gb|FK283132.1|FK283132
genomic: CTGGTGCTCC-AACGA-TC-TTCAATTGTgtaagtctgc ... aatatttcagGTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAA
EST: GGCCTGGTGCTCCAACGATCTTCAATCGT GTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAAEST: gi|7925031|gb|AW831057.1|AW831057
genomic: GGCCTGGTGCTCCAACGATCTTCAATTGTgtaagtctgc ... aatatttcagGTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAA
EST: GGCCTGGTGCTCCAACGATCTTCAATTGT GTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAAEST: gi|254320655|gb|GR827104.1|GR827104
genomic: GGCCTGGTGCTCCAACGATCTTCAATTGTgtaagtctgc ... aatatttcagGTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAA
EST: GGCCTGGTGCTCCAACGATCTTCAATTGT GTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAAEST: gi|208275603|gb|GE078223.1|GE078223
genomic: GGCCTGGTGCTCCAACGATCTTCAATTGTgtaagtctgc ... aatatttcagGTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAA
EST: GGCCTGGTGCTCCAACGATCTTCAATTGT GTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAAEST: gi|24136670|gb|BU927180.1|BU927180
genomic: GGCCTGGTGCTCCAACGATCTTCAATTGTgtaagtctgc ... aatatttcagGTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAA
EST: GGCCTGGTGCTCCAACGATCTTCAATTGT GTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAAEST: gi|5510301|gb|AI856743.1|AI856743
genomic: GGCCTGGTGCTCCAACGATCTTCAATTGTgtaagtctgc ... aatatttcagGTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAA
EST: GGCCTGGTGCTCCAACGATCTTCAATTGT GTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAAEST: gi|9986811|gb|BE660919.1|BE660919
genomic: GGCCTGGTGCTCCAACGATCTTCAATTGTgtaagtctgc ... aatatttcagGTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAA
EST: GGCCTGGTGCTCCAACGATCTTCAATTGT GTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAAEST: gi|298199436|gb|HO042799.1|HO042799
genomic: GGCCTGGTGCTCCAACGATCTTCAATTGTgtaagtctgc ... aatatttcagGTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAA
EST: GGCCTGGTGCTCCAACGATCTTCAATTGT GTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAAEST: gi|207702226|gb|GD682981.1|GD682981
genomic: GGCCTGGTGCTCCAACGATCTTCAATTGTgtaagtctgc ... aatatttcagGTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAA
EST: GGCCTGGTGCTCCAACGATCTTCAATTGT GTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAA
genomic: GGCCTGGTGCTCCAACGATCTTCAATTGTgtaagtctgc ... aatatttcagGTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAA
ttttcaaatatcacctttgagcaatttgttaatgtaacttgattaaatatttcagGTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAATCGGGTCTTATCAAG
aatttgttaatgtaac TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tactaatattgttatatttccaaaggacaaaaaaaagatttttttttttcaaatatcacctttgagcaatttgttaatgtaacttgattaaatatttcagGTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAATCGGGTCTTATCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG