1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tttatattcaattttctctgtattttattttgttttgcaccttttttgagtggtgtgtaccctcgtgaccaaatgcttttttttttatcttgctcttcagGTGACGCATGCCGACTTTAAGAAGGCAAAGGATAAAGTTATGTTTAAGAAGAAAGAAGGAGTGCCCGAAGGACTGTATATGTGAAGCATCTTCATCAATT
species | Glycine max |
transcript | GLYMA03G32800.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CAATATGTACTGAAGCTGGCTTACTTGCTTTACGAGAACGCCGAATGAAG GTGACGCATGCCGACTTTAAGAAGGCAAAGGATAAAGTTATGTTTAAGAAGEST: gi|254329470|gb|GR839033.1|GR839033
genomic: CAATATGTACTGAAGCTGGCTTACTTGCTTTACGAGAACGCCGAATGAAGgttagaagta ... tgctcttcagGTGACGCATGCCGACTTTAAGAAGGCAAAGGATAAAGTTATGTTTAAGAAG
EST: CAATATGTACTGAAGCTGGCTTACTTGCTTTACGAGAACGCCGAATGAAG GTGACGCATGCCGACTTTAAGAAGGCAAAGGATAAAGTTATGTTTAAGAAGEST: gi|58014587|gb|CX701329.1|CX701329
genomic: CAATATGTACTGAAGCTGGCTTACTTGCTTTACGAGAACGCCGAATGAAGgttagaagta ... tgctcttcagGTGACGCATGCCGACTTTAAGAAGGCAAAGGATAAAGTTATGTTTAAGAAG
EST: CAATATGTACTGAAGCTGGCTTACTTGCTTTACGAGAACGCCGAATGAAG GTGACGCATGCCGACTTTAAGAAGGCAAAGGATAAAGTTATGTTTAAGAAGEST: gi|58019738|gb|CX706480.1|CX706480
genomic: CAATATGTACTGAAGCTGGCTTACTTGCTTTACGAGAACGCCGAATGAAGgttagaagta ... tgctcttcagGTGACGCATGCCGACTTTAAGAAGGCAAAGGATAAAGTTATGTTTAAGAAG
EST: CAATATGTACTGAAGCTGGCTTACTTGCTTTACGAGAACGCCGAATGAAG GTGACGCATGCCGACTTTAAGAAGGCAAAGGATAAAGTTATGTTTAAGAAGEST: gi|254329469|gb|GR839032.1|GR839032
genomic: CAATATGTACTGAAGCTGGCTTACTTGCTTTACGAGAACGCCGAATGAAGgttagaagta ... tgctcttcagGTGACGCATGCCGACTTTAAGAAGGCAAAGGATAAAGTTATGTTTAAGAAG
EST: CAATATGTACTGAAGCTGGCTTACTTGCTTTACGAGAACGCCGAATGAAG GTGACGCATGCCGACTTTAAGAAGGCA
genomic: CAATATGTACTGAAGCTGGCTTACTTGCTTTACGAGAACGCCGAATGAAGgttagaagta ... tgctcttcagGTGACGCATGCCGACTTTAAGAAGGCA
ttgagtggtgtgtaccctcgtgaccaaatgcttttttttttatcttgctcttcagGTGACGCATGCCGACTTTAAGAAGGCAAAGGATAAAGTTATGTTTAAGAAGAAAGAAGGAGTGCCCGAAGGACTGTATATGTGAAGCATCTTCATCAATT
tgcttttttttttatc CT-rich tract
aaatgctttttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttatattcaattttctctgtattttattttgttttgcaccttttttgagtggtgtgtaccctcgtgaccaaatgcttttttttttatcttgctcttcagGTGACGCATGCCGACTTTAAGAAGGCAAAGGATAAAGTTATGTTTAAGAAGAAAGAAGGAGTGCCCGAAGGACTGTATATGTGAAGCATCTTCATCAATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - -ctctgta
- - - - - - - - - - - - - - - - - -tgcacct
- - - - - - - - - - - - - - - - - - - - - - - - - tggtgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccctcgt