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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttttcacactacattttttcttttgatgtgtgttatttgcaaaattagggacttcatctcattgaagaaaatccaataaatgattaatcataatgtttaagagctttgaaatttcagGCTGACATACTGGAACAGATTCGAACAACTGGACTCTTCAAACACGTGACAAGGTGGTTGGATTCTGAAAGTTCATGTTGTAATACTTTAGCAAACCTTG

Basic information

species Glycine max
transcript GLYMA03G32210.2
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18041328|gb|BM309622.1|BM309622
EST:     ATGGGAATCTCACACTGAGTGAGGAGGAGAAAGGAAGGCTAGCTATCAAG                         GCTGACATACTGGAACAGATTCGAACAACTGGACTCTTCAAACACGTGACA
genomic: ATGGGAATCTCACACTGAGTGAGGAGGAGAAAGGAAGGCTAGCTATCAAGgttttcacac ... gaaatttcagGCTGACATACTGGAACAGATTCGAACAACTGGACTCTTCAAACACGTGACA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgaagaaaatccaataaatgattaatcataatgtttaagagctttgaaatttcagGCTGACATACTGGAACAGATTCGAACAACTGGACTCTTCAAACACGTGACAAGGTGGTTGGATTCTGAAAGTTCATGTTGTAATACTTTAGCAAACCTTG
                   gattaat  putative branch site (score: 3)
            aataaatgattaatca  TA-rich tract