1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gcaataagagaactaaacactttctctctctctctctctcttttttttttttctttttacatagtttaagtgatttgctcaacttttttaccctctttagGTTCATGCTTGTATCAAGGCCTCACAGGGAACCTGGATTGCTTTATACTCTG
species | Glycine max |
transcript | GLYMA03G32200.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTTTGGGAAGGCATGAATTACATCGATGAGGATACTGGACAATCTAGGGG GTTCATGCTTGTATCAAGGCCTCACAGGGAACCTGGATTGCTTTATACTCTEST: gi|193640977|gb|FK593180.1|FK593180
genomic: CTTTGGGAAGGCATGAATTACATCGATGAGGATACTGGACAATCTAGGGGgtaaactttc ... ccctctttagGTTCATGCTTGTATCAAGGCCTCACAGGGAACCTGGATTGCTTTATACTCT
EST: CTTTGGGAAGGCATGAATTACATCGATGAGGATACTGGACAATCTAGGGG GTTCATGCTTGTATCAAGGCCTCACAGGGAACCTGGATTGACTTTATACTC
genomic: CTTTGGGAAGGCATGAATTACATCGATGAGGATACTGGACAATCTAGGGGgtaaactttc ... ccctctttagGTTCATGCTTGTATCAAGGCCTCACAGGGAACCTGGATTG-CTTTATACTC
tttttttctttttacatagtttaagtgatttgctcaacttttttaccctctttagGTTCATGCTTGTATCAAGGCCTCACAGGGAACCTGGATTGCTTTATACTCTG
ctcaacttttttaccc CT-rich tract
tttttacatagtttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaataagagaactaaacactttctctctctctctctctcttttttttttttctttttacatagtttaagtgatttgctcaacttttttaccctctttagGTTCATGCTTGTATCAAGGCCTCACAGGGAACCTGGATTGCTTTATACTCTG
- - - - - - - - -cactttc
- - - - - - - - - - - -ctctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatttg