1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...cttggacacaaaatgaatgagctttaaatgaagcaaatatttttagaactaaaccaaggctgtgtagtttttggtgtatgagagatctaactttgtgtagGAAGTTTGGAAACAACGAGTTCATAATTACTGGAGCAAGCTAGCCAGTAAGATTAAGCCTGACACAATTCGCAACGTGATGGATATGAAGGCGAATTTGG
species | Glycine max |
transcript | GLYMA03G32130.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGTTTGAGAAGGACATG GAAGTTTGGAAACAACGAGTTCATAATTACTGGAGCAAGCTAGCCAGTAAGEST: gi|14011946|gb|BG726868.1|BG726868
genomic: TGTTTGAGAAGGACATGgtaattaaat ... ctttgtgtagGAAGTTTGGAAACAACGAGTTCATAATTACTGGAGCAAGCTAGCCAGTAAG
EST: CTCGTCTGGCAGAAATTCACTATTCTACTGAAATGTTTGAGAAGGACATG GAAGTTTGGAAACAACGAGTTCATAATTACTGGAGCAAGCTAGCCAGTAAGEST: gi|8825745|gb|BE209411.1|BE209411
genomic: CTCGTCTGGCAGAAATTCACTATTCTACTGAAATGTTTGAGAAGGACATGgtaattaaat ... ctttgtgtagGAAGTTTGGAAACAACGAGTTCATAATTACTGGAGCAAGCTAGCCAGTAAG
EST: AGAAATTCACTATTCTACTGAAATGTTTGAGAAGGACATG GAAGTTTGGAAACAACGAGTTCATAATTACTGGAGCAAGCTAGCCAGTAAG
genomic: AGAAATTCACTATTCTACTGAAATGTTTGAGAAGGACATGgtaattaaat ... ctttgtgtagGAAGTTTGGAAACAACGAGTTCATAATTACTGGAGCAAGCTAGCCAGTAAG
gaactaaaccaaggctgtgtagtttttggtgtatgagagatctaactttgtgtagGAAGTTTGGAAACAACGAGTTCATAATTACTGGAGCAAGCTAGCCAGTAAGATTAAGCCTGACACAATTCGCAACGTGATGGATATGAAGGCGAATTTGG
atctaac putative branch site (score: 2)
tagttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttggacacaaaatgaatgagctttaaatgaagcaaatatttttagaactaaaccaaggctgtgtagtttttggtgtatgagagatctaactttgtgtagGAAGTTTGGAAACAACGAGTTCATAATTACTGGAGCAAGCTAGCCAGTAAGATTAAGCCTGACACAATTCGCAACGTGATGGATATGAAGGCGAATTTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA