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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtagactttttaatcatatatggcttttgaaggagtgtttgttcacagttttcctttccctttccatttgttgtcttctgcttccgttcatttttgtttgggaggaagaagaggggcagagtgcatattcatgtctgtttcaatggcttgggtctgatcttgcagGTATTCGAGACCAAATCCAACCAGAGAATGTTCACGCTTGTAGCATCCTTTGTTGTGCTCTTTCTTATAATATACTACCTCACTAG

Basic information

species Glycine max
transcript GLYMA03G31790.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6481834|gb|AW201105.1|AW201105
EST:     TGGATTCATCAAGAGGGGTCCTTTCGGGCACTATGGACAAATTTAAAATG                         GTATTCGAGACCAAATCCAACCAGAGAATGTTCACGCTTGTAGCATCCTTT
genomic: TGGATTCATCAAGAGGGGTCCTTTCGGGCACTATGGACAAATTTAAAATGgtatgtagac ... gatcttgcagGTATTCGAGACCAAATCCAACCAGAGAATGTTCACGCTTGTAGCATCCTTT
EST: gi|22929412|gb|BU546551.1|BU546551
EST:     TGGATTCATCAAGAGGGGTCCTTTCGGGCACTATGGACAAATTTAAAATG                         GTATTCGAGACCAAATCCAACCAGAGAATGTTCACGCTTGTAGCATCCTTT
genomic: TGGATTCATCAAGAGGGGTCCTTTCGGGCACTATGGACAAATTTAAAATGgtatgtagac ... gatcttgcagGTATTCGAGACCAAATCCAACCAGAGAATGTTCACGCTTGTAGCATCCTTT
EST: gi|7693452|gb|AW761544.1|AW761544
EST:     TGGATTCATCAAGAGGGGTCCTTTCGGGCACTATGGACAAATTTAAAATG                         GTATTCGAGACCAAATCCAACCAGAGAATGTTCACGCTTGTAGCATCCTTT
genomic: TGGATTCATCAAGAGGGGTCCTTTCGGGCACTATGGACAAATTTAAAATGgtatgtagac ... gatcttgcagGTATTCGAGACCAAATCCAACCAGAGAATGTTCACGCTTGTAGCATCCTTT
EST: gi|208289260|gb|GE084965.1|GE084965
EST:     TGGATTCATCAAGAGGGGTCCTTTCGGGCACTATGGACAAATTTAAAATG                         GTATTCGAGACCAAATCCA
genomic: TGGATTCATCAAGAGGGGTCCTTTCGGGCACTATGGACAAATTTAAAATGgtatgtagac ... gatcttgcagGTATTCGAGACCAAATCCA
EST: gi|7286192|gb|AW598679.1|AW598679
EST:     TGGATTCATCAAGAGGGGTCCTTTCGGGCACTATGGACAAATTTAAAATG                         GTATTCGAGACCAAATCCAACCAGAGAATGTTCACGCTTGTAGCATCCTTT
genomic: TGGATTCATCAAGAGGGGTCCTTTCGGGCACTATGGACAAATTTAAAATGgtatgtagac ... gatcttgcagGTATTCGAGACCAAATCCAACCAGAGAATGTTCACGCTTGTAGCATCCTTT
EST: gi|17963404|gb|BM270153.1|BM270153
EST:     TGGATTCATCAAGAGGGGTCCTTTCGGGCACTATGGACAAATTTAAAATG                         GTATTCGAGACCAAATCCAACCAGAGAATGTTCACGCTTGTAGCATCCTTT
genomic: TGGATTCATCAAGAGGGGTCCTTTCGGGCACTATGGACAAATTTAAAATGgtatgtagac ... gatcttgcagGTATTCGAGACCAAATCCAACCAGAGAATGTTCACGCTTGTAGCATCCTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaggggcagagtgcatattcatgtctgtttcaatggcttgggtctgatcttgcagGTATTCGAGACCAAATCCAACCAGAGAATGTTCACGCTTGTAGCATCCTTTGTTGTGCTCTTTCTTATAATATACTACCTCACTAG
                                         gtctgat  putative branch site (score: 4)
              atattcat  TA-rich tract