Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatttttcttttaagaattcgcagcagatggagttgccttaatgttcattcaattcaatcccaaggcttgcaaacatttcagGTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAGAAAAAGA

Basic information

species Glycine max
transcript GLYMA03G31340.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208264835|gb|GE062167.1|GE062167
EST:     GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAG                         GTAATGCTGAAAA
genomic: GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGgtaaattttt ... aacatttcagGTAATGCTGAAAA
EST: gi|193665814|gb|FK612993.1|FK612993
EST:     GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAG                         GTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACCATTACC
genomic: GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGgtaaattttt ... aacatttcagGTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACCATTACC
EST: gi|207776619|gb|GD748681.1|GD748681
EST:     GTGATCTTCACTGGAAAAT-GTGTCTGTTTANATACATAGAACTGGCCAG                         GTAATGCTGAAAA
genomic: GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGgtaaattttt ... aacatttcagGTAATGCTGAAAA
EST: gi|193628958|gb|FK576408.1|FK576408
EST:     GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAG                         GTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACCATTA
genomic: GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGgtaaattttt ... aacatttcagGTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACCATTA
EST: gi|208214526|gb|GE012871.1|GE012871
EST:     GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAG                         GTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAG
genomic: GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGgtaaattttt ... aacatttcagGTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAG
EST: gi|193431175|gb|FK398587.1|FK398587
EST:     GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAG                         GTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAG
genomic: GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGgtaaattttt ... aacatttcagGTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAG
EST: gi|193590831|gb|FK548176.1|FK548176
EST:     GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAG                         GTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACCATTACC
genomic: GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGgtaaattttt ... aacatttcagGTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACCATTACC
EST: gi|193639006|gb|FK586017.1|FK586017
EST:     GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAG                         GTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAG
genomic: GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGgtaaattttt ... aacatttcagGTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAG
EST: gi|193532454|gb|FK491476.1|FK491476
EST:     GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAG                         GTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAG
genomic: GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGgtaaattttt ... aacatttcagGTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAG
EST: gi|207680614|gb|GD662748.1|GD662748
EST:     GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAG                         GTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAG
genomic: GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGgtaaattttt ... aacatttcagGTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAG
EST: gi|193569963|gb|FK526714.1|FK526714
EST:     GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGA-CTGGCCAG                         GTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACCGTTAACCAAAAA
genomic: GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGgtaaattttt ... aacatttcagGTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACCATTA-CCAAAAA
EST: gi|193682345|gb|FK624143.1|FK624143
EST:     GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAG                         GTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAG
genomic: GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGgtaaattttt ... aacatttcagGTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAG
EST: gi|193530081|gb|FK486140.1|FK486140
EST:     GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAG                         GTAATGCTGAAAA
genomic: GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGgtaaattttt ... aacatttcagGTAATGCTGAAAA
EST: gi|208333430|gb|GE126195.1|GE126195
EST:     CTGTTTATATACATAGAACTGGCCAG                         GTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAG
genomic: CTGTTTATATACATAGAACTGGCCAGgtaaattttt ... aacatttcagGTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAG
EST: gi|207826240|gb|GD799071.1|GD799071
EST:     GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAG                         GTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAG
genomic: GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGgtaaattttt ... aacatttcagGTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAG
EST: gi|193680688|gb|FK621164.1|FK621164
EST:     GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAG                         GTAATGCTGAAAA
genomic: GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGgtaaattttt ... aacatttcagGTAATGCTGAAAA
EST: gi|193674504|gb|FK619962.1|FK619962
EST:     GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAG                         GTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAG
genomic: GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGgtaaattttt ... aacatttcagGTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAG
EST: gi|193726825|gb|FK656903.1|FK656903
EST:     GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAG                         GTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACCATTAACCAAAAA
genomic: GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGgtaaattttt ... aacatttcagGTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACCATTA-CCAAAAA
EST: gi|193397751|gb|FK363729.1|FK363729
EST:     GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAG                         GTAATGCTGAAAATGAAGAGCAG
genomic: GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGgtaaattttt ... aacatttcagGTAATGCTGAAAATGAAGAGCAG
EST: gi|208205432|gb|GE008335.1|GE008335
EST:     GTGATCTTCACTGGAAAATAGTGTCTGTTTATAGACATAGAACTGGCCAG                         GTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACCAT
genomic: GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGgtaaattttt ... aacatttcagGTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACCAT
EST: gi|207713581|gb|GD695256.1|GD695256
EST:     GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAG                         GTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAG
genomic: GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGgtaaattttt ... aacatttcagGTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAG
EST: gi|193642053|gb|FK593663.1|FK593663
EST:     GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAG                         GTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAG
genomic: GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGgtaaattttt ... aacatttcagGTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAG
EST: gi|193487608|gb|FK449719.1|FK449719
EST:     GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAG                         GTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAG
genomic: GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGgtaaattttt ... aacatttcagGTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAG
EST: gi|193335624|gb|FK301850.1|FK301850
EST:     GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAG                         GTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAG
genomic: GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGgtaaattttt ... aacatttcagGTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAG
EST: gi|193689324|gb|FK630457.1|FK630457
EST:     GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAG                         GTAATGCTGAAAA
genomic: GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGgtaaattttt ... aacatttcagGTAATGCTGAAAA
EST: gi|193578827|gb|FK536675.1|FK536675
EST:     GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAG                         GTAATGCTGAAAATGAAGAGCAGACATGTTGCGGGAACCATTAC
genomic: GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGgtaaattttt ... aacatttcagGTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACCATTAC
EST: gi|193677566|gb|FK616168.1|FK616168
EST:     GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAG                         GTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACCAT
genomic: GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGgtaaattttt ... aacatttcagGTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACCAT
EST: gi|208092117|gb|GD890988.1|GD890988
EST:     GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAG                         GTAATGCTGAAAATGAAGAGCAGACACGTTGCAGGAACCATTACCAAAAAG
genomic: GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGgtaaattttt ... aacatttcagGTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAG
EST: gi|208108627|gb|GD907101.1|GD907101
EST:     GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAG                         GTAATGCTAGAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAA
genomic: GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGgtaaattttt ... aacatttcagGTAATGCT-GAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAA
EST: gi|207707758|gb|GD688153.1|GD688153
EST:     GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAG                         GTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAG
genomic: GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGgtaaattttt ... aacatttcagGTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAG
EST: gi|207821854|gb|GD794293.1|GD794293
EST:     GTGATCTTCACTGGAAA-TAGTGTCTGTTTATATACATAGAACTGGCCAG                         GTAATGCTGAAAA
genomic: GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGgtaaattttt ... aacatttcagGTAATGCTGAAAA
EST: gi|208311149|gb|GE108525.1|GE108525
EST:     GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAG                         GTAATGCTGAAAATGAAGAGCAGACA
genomic: GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGgtaaattttt ... aacatttcagGTAATGCTGAAAATGAAGAGCAGACA
EST: gi|208304818|gb|GE106159.1|GE106159
EST:     GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAG                         GTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAG
genomic: GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGgtaaattttt ... aacatttcagGTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAG
EST: gi|207791987|gb|GD765993.1|GD765993
EST:     GTGATCTTCACTGGAAAATAGTGTCTGTTTATGTACATAGAACTGGCCAG                         GTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAG
genomic: GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGgtaaattttt ... aacatttcagGTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAG
EST: gi|207740966|gb|GD714344.1|GD714344
EST:     GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAG                         GTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAA-G
genomic: GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGgtaaattttt ... aacatttcagGTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAG
EST: gi|193387603|gb|FK350920.1|FK350920
EST:     GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAG                         GTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACCATTAACCAAAAA
genomic: GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGgtaaattttt ... aacatttcagGTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACCATTA-CCAAAAA
EST: gi|208087921|gb|GD891077.1|GD891077
EST:     GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAG                         GTAATGCTGAAAATGAAGAGCAGACATGTTGNAGGAACCATTA
genomic: GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGgtaaattttt ... aacatttcagGTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACCATTA
EST: gi|193556208|gb|FK514777.1|FK514777
EST:     GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAG                         GTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAG
genomic: GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGgtaaattttt ... aacatttcagGTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAG
EST: gi|208149642|gb|GD948206.1|GD948206
EST:     GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAG                         GTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAG
genomic: GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGgtaaattttt ... aacatttcagGTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAG
EST: gi|208206815|gb|GE002536.1|GE002536
EST:     GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAG                         GTAATGCTGAAAATGAAGAGCAGACATGTTGCAAGGAA
genomic: GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGgtaaattttt ... aacatttcagGTAATGCTGAAAATGAAGAGCAGACATGTTGCA-GGAA
EST: gi|208220718|gb|GE016748.1|GE016748
EST:     GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAG                         GTAATGCTGAAAA
genomic: GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGgtaaattttt ... aacatttcagGTAATGCTGAAAA
EST: gi|193710288|gb|FK645520.1|FK645520
EST:     GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAG                         GTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAG
genomic: GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGgtaaattttt ... aacatttcagGTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAG
EST: gi|193350580|gb|FK315414.1|FK315414
EST:     GTGTCTGTTTATATACATAGAACTGGCCAG                         GTAATGCTGAAAATGAAGAGCAGACATGTTGCAG
genomic: GTGTCTGTTTATATACATAGAACTGGCCAGgtaaattttt ... aacatttcagGTAATGCTGAAAATGAAGAGCAGACATGTTGCAG
EST: gi|193542571|gb|FK501036.1|FK501036
EST:     GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAG                         GTAATGCTGAA
genomic: GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGgtaaattttt ... aacatttcagGTAATGCTGAA
EST: gi|208306412|gb|GE108327.1|GE108327
EST:     GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAG                         GTAATGCTGAAAATAGAAGAGCAGACA
genomic: GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGgtaaattttt ... aacatttcagGTAATGCTGAAAAT-GAAGAGCAGACA
EST: gi|193607866|gb|FK557549.1|FK557549
EST:     GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAG                         GTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCA
genomic: GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGgtaaattttt ... aacatttcagGTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCA
EST: gi|207791860|gb|GD764999.1|GD764999
EST:     GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAG                         GTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACCATTACC
genomic: GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGgtaaattttt ... aacatttcagGTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACCATTACC
EST: gi|208328005|gb|GE121197.1|GE121197
EST:     GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAG                         GTAATGCTGAAAATGAAGAGCAGA
genomic: GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGgtaaattttt ... aacatttcagGTAATGCTGAAAATGAAGAGCAGA
EST: gi|193631087|gb|FK584556.1|FK584556
EST:     GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAG                         GTAATGCTGAAAATGAAGAGCAGACATGTTGACAGGAACCATTACCAAA
genomic: GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGgtaaattttt ... aacatttcagGTAATGCTGAAAATGAAGAGCAGACATGTTG-CAGGAACCATTACCAAA
EST: gi|207784474|gb|GD757329.1|GD757329
EST:     GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAG                         GTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACCATTAC
genomic: GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGgtaaattttt ... aacatttcagGTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACCATTAC
EST: gi|208197041|gb|GD995868.1|GD995868
EST:     GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAG                         GTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAG
genomic: GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGgtaaattttt ... aacatttcagGTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAG
EST: gi|207818758|gb|GD792021.1|GD792021
EST:     GATCTTCACTGGAAAATAGTGTTCTTGTTTATATACATAGAACTGGCCAG                         GTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAG
genomic: GATCTTCACTGGAAAATAGTG-TC-TGTTTATATACATAGAACTGGCCAGgtaaattttt ... aacatttcagGTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAG
EST: gi|193494765|gb|FK463593.1|FK463593
EST:     GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAG                         GTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAG
genomic: GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGgtaaattttt ... aacatttcagGTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAG
EST: gi|193484532|gb|FK451616.1|FK451616
EST:     GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAG                         GTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAG
genomic: GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGgtaaattttt ... aacatttcagGTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAG
EST: gi|208260372|gb|GE058498.1|GE058498
EST:     GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAG                         GTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACCATTACC
genomic: GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGgtaaattttt ... aacatttcagGTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACCATTACC
EST: gi|208312003|gb|GE109855.1|GE109855
EST:     GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAG                         GTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACCAT
genomic: GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGgtaaattttt ... aacatttcagGTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACCAT
EST: gi|193447792|gb|FK411397.1|FK411397
EST:     GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAG                         GTAATGCTAAAAA
genomic: GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGgtaaattttt ... aacatttcagGTAATGCTGAAAA
EST: gi|207787136|gb|GD758717.1|GD758717
EST:     GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAG                         GTAATGCTGAAAATGAAGAGCAGACA
genomic: GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGgtaaattttt ... aacatttcagGTAATGCTGAAAATGAAGAGCAGACA
EST: gi|208288992|gb|GE085369.1|GE085369
EST:     GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAG                         GTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAG
genomic: GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGgtaaattttt ... aacatttcagGTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAG
EST: gi|193405014|gb|FK373385.1|FK373385
EST:     GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAG                         GTAATGCTGAAAA
genomic: GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGgtaaattttt ... aacatttcagGTAATGCTGAAAA
EST: gi|208293996|gb|GE090791.1|GE090791
EST:     GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAG                         GTAATGCTGAAAA
genomic: GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGgtaaattttt ... aacatttcagGTAATGCTGAAAA
EST: gi|193656719|gb|FK603751.1|FK603751
EST:     GTGATTTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAG                         GTAATGCTGAAAATGAAG
genomic: GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGgtaaattttt ... aacatttcagGTAATGCTGAAAATGAAG
EST: gi|208243116|gb|GE040266.1|GE040266
EST:     GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAG                         GTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACCATTACC
genomic: GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGgtaaattttt ... aacatttcagGTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACCATTACC
EST: gi|193338799|gb|FK303110.1|FK303110
EST:     GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAG                         GTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAA
genomic: GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGgtaaattttt ... aacatttcagGTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAA
EST: gi|208057371|gb|GD849912.1|GD849912
EST:     GTGATCTTCACTGGAAA-TAGTGTCTGTTTATATACATAGAACTGGCCAG                         GTAATGCTGAAAA
genomic: GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGgtaaattttt ... aacatttcagGTAATGCTGAAAA
EST: gi|193493966|gb|FK461822.1|FK461822
EST:     ATAGAACTGGCCAG                         GTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAG
genomic: ATAGAACTGGCCAGgtaaattttt ... aacatttcagGTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAG
EST: gi|193525921|gb|FK478906.1|FK478906
EST:     GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAG                         GTAATGCTGAAA
genomic: GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGgtaaattttt ... aacatttcagGTAATGCTGAAA
EST: gi|208297340|gb|GE094431.1|GE094431
EST:     GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAG                         GTAATGCTGAAAATGAAGAGCAG
genomic: GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGgtaaattttt ... aacatttcagGTAATGCTGAAAATGAAGAGCAG
EST: gi|208208293|gb|GE004252.1|GE004252
EST:     AAAATAGTGTCTGTTTATATACATAGAACTGGCCAG                         GTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAG
genomic: AAAATAGTGTCTGTTTATATACATAGAACTGGCCAGgtaaattttt ... aacatttcagGTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAG
EST: gi|193560982|gb|FK519365.1|FK519365
EST:     GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAG                         GTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACCATTAACCAAAAA
genomic: GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGgtaaattttt ... aacatttcagGTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACCATTA-CCAAAAA
EST: gi|208136048|gb|GD935857.1|GD935857
EST:     GTGATCTTCACTGGAAA-TAGTGTCTGTTTATATACATAGAACTGGCCAG                         GTAATGCTGAAAA
genomic: GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGgtaaattttt ... aacatttcagGTAATGCTGAAAA
EST: gi|193373899|gb|FK339817.1|FK339817
EST:     GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAG                         GTAATGCTGAAAATGAAGAGCAG
genomic: GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGgtaaattttt ... aacatttcagGTAATGCTGAAAATGAAGAGCAG
EST: gi|208266065|gb|GE063574.1|GE063574
EST:     GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAG                         GTAATGCTGAAAA
genomic: GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGgtaaattttt ... aacatttcagGTAATGCTGAAAA
EST: gi|193538688|gb|FK495964.1|FK495964
EST:     GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAG                         GTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACCATTA
genomic: GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGgtaaattttt ... aacatttcagGTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACCATTA
EST: gi|208054217|gb|GD854410.1|GD854410
EST:     GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGC-AG                         GTAATGCTGAAAA
genomic: GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGgtaaattttt ... aacatttcagGTAATGCTGAAAA
EST: gi|193639885|gb|FK593994.1|FK593994
EST:     GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAG                         GTAATGCTGAAAA
genomic: GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGgtaaattttt ... aacatttcagGTAATGCTGAAAA
EST: gi|208191270|gb|GD991988.1|GD991988
EST:     GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAG                         GTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAG
genomic: GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGgtaaattttt ... aacatttcagGTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAG
EST: gi|208240225|gb|GE042335.1|GE042335
EST:     TATACATAGAACTGGCCAG                         GTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAG
genomic: TATACATAGAACTGGCCAGgtaaattttt ... aacatttcagGTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAG
EST: gi|193730605|gb|FK665775.1|FK665775
EST:     GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAG                         GTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAG
genomic: GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGgtaaattttt ... aacatttcagGTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAG
EST: gi|193695684|gb|FK633456.1|FK633456
EST:     GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAG                         GTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAG
genomic: GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGgtaaattttt ... aacatttcagGTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atggagttgccttaatgttcattcaattcaatcccaaggcttgcaaacatttcagGTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAGAAAAAGA
         ccttaat  putative branch site (score: 4)
           ttaatgtt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaaatttttcttttaagaattcgcagcagatggagttgccttaatgttcattcaattcaatcccaaggcttgcaaacatttcagGTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAGAAAAAGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA