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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtctatgtgtgttattataaccattaggatgtattagttaattagttaattaattaatcacttacgtatatgatgtagAGTTTTGGTAGTCAAGAATGGGATGCTGGTTTTGCAGTTCAAGCTTTGCTTGCAACTAAGCTAATTGACGAAATTGGCCATTCACTTGCAAAAGGGCATG

Basic information

species Glycine max
transcript GLYMA03G27620.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G27620.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv09s0054g01220.t01 (Vitis vinifera), 3'ss of exon 8
----------------------gtacgtctatgtgtgttattataaccattagga--tgtattagttaattagttaattaattaatcacttacgtat-atgatgtagAGTTTTGGTAGTCAAGAATGGGATGCTGGTTTTGCAGTTCAAGCTTTGCTTGCAACTAAGCTAATTGACGAAATTGGCCATTCACTTGCAAAAGGGCATG
                        |  ||       |||||   ||  | ||     | ||    ||   |   |||||  ||    | || |  ||    |||||||| |||||||||||||| |||||  ||||||||||  |||||||  | || ||   |||  | |  || |||||||| | | ||||    ||||| ||||
gtcagaaaacaagttcaatcactaatctccccaacagttatagaaaaaagtaatgcctttagccctttcctgcctaattggttttgaaattgctgattgaaatgtagAGCTTTGGTAGTCAAGAGTGGGACACTGGTTTTGCCCTTCAAGCAGTACTAGCTTGTAATATGACCGATGAAATTGGACCTACACTCAAGAAAGGCCATG

upper sequence: GLYMA03G27620.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv09s0054g01520.t01 (Vitis vinifera), 3'ss of exon 12
-------------------------------------------------------------------------------------------------gtacgtctatgtgtgttattataaccattaggatgtattagttaattagttaattaattaatcacttacgtat-atgatgtagAGTTTTGGTAGTCAAGAATGGGATGCTGGTTTTGCAGTTCAAGCTTTGCTTGCAACTAAGCTAATTGACGAAATTGGCCATTCACTTGCAAAAGGGCATG
                                                                                                  | |   || |    |  ||  ||  | | | || ||    ||   |   |||||  ||    | || |  ||    |||||||| |||||||||||||| |||||  ||||||||||  ||||||| || || ||   |||  | | ||| |||||||| | | ||||    ||||| ||||
gtcagaaagcaagttcaatcactaatctccccaacagttgtagaaaaaattagtatctatttatttatttattttaacattaagtttgattgaagattttctgttaagcaactggtttaaagtaat-gcatttagccctttcctgcctaattggttttgaaattgctgattgaaatgtagAGCTTTGGTAGTCAAGAGTGGGACACTGGTTTTGCCCTTCAAGCATTACTAGCTTGTAATATGACTGATGAAATTGGACCTACACTCAAGAAAGGCCATG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaggatgtattagttaattagttaattaattaatcacttacgtatatgatgtagAGTTTTGGTAGTCAAGAATGGGATGCTGGTTTTGCAGTTCAAGCTTTGCTTGCAACTAAGCTAATTGACGAAATTGGCCATTCACTTGCAAAAGGGCATG
                                   cacttac  putative branch site (score: 2)
     atgtattagttaatta  TA-rich tract