1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatgttgatctatagttttcatcttgtgatcttagcatggttctcacttctagcgaaacattacctaacagtattttgttttcatctgattttacccgttgttgctaaaagggcttggaaattaaaactacatagatattgtctttcattgtcagaaatactgtcttggcatctttaaaaccgttgacagtgcagGTGGACTTCTTGGCCAAATTGGTGGCTCTAAAACCTGGAAAAAATGTGCTTGATATGATAAGAAATGTAATGCAAGGAAAAGATGAAGGTGCAGACAAAT
species | Glycine max |
transcript | GLYMA03G22370.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTACGGACGAAAGAAACCACCGTGGATTCTATACTCTTCCTCAGCCTGAG GTGGACTTCTTGGCCAAATTGGTGGCTCTAAAACCTGGAAAAAATGTGCEST: gi|9440489|gb|BE440993.1|BE440993
genomic: TTACGGACGAAAGAAACCACCGTGGATTCTATACTCTTCCTCAGCCTGAGgtatgttgat ... gacagtgcagGTGGACTTCTTGGCCAAATTGGTGGCTCTAAAACCTGGAAAAAATGTGC
EST: TTACGGACGAAAGAAACCACCGTGGATTCTATACTCTTCCTCAGCCTGAG GTGGACTTCTTGGCCAAATTGGTGGCTCTAAAACCTGGAAAAAATGTGCTTEST: gi|208325120|gb|GE118354.1|GE118354
genomic: TTACGGACGAAAGAAACCACCGTGGATTCTATACTCTTCCTCAGCCTGAGgtatgttgat ... gacagtgcagGTGGACTTCTTGGCCAAATTGGTGGCTCTAAAACCTGGAAAAAATGTGCTT
EST: TTACGGACGAAAGAAACCACCGTGGATTCTATACTCTTCCTCAGCCTGAG GTGGACTTCTTGGCCAAATTGGTGGCTCTAAAACCTGGAAAAAATGTGCTT
genomic: TTACGGACGAAAGAAACCACCGTGGATTCTATACTCTTCCTCAGCCTGAGgtatgttgat ... gacagtgcagGTGGACTTCTTGGCCAAATTGGTGGCTCTAAAACCTGGAAAAAATGTGCTT
gtctttcattgtcagaaatactgtcttggcatctttaaaaccgttgacagtgcagGTGGACTTCTTGGCCAAATTGGTGGCTCTAAAACCTGGAAAAAATGTGCTTGATATGATAAGAAATGTAATGCAAGGAAAAGATGAAGGTGCAGACAAAT
cgttgac putative branch site (score: 4)
atctttaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgttgatctatagttttcatcttgtgatcttagcatggttctcacttctagcgaaacattacctaacagtattttgttttcatctgattttacccgttgttgctaaaagggcttggaaattaaaactacatagatattgtctttcattgtcagaaatactgtcttggcatctttaaaaccgttgacagtgcagGTGGACTTCTTGGCCAAATTGGTGGCTCTAAAACCTGGAAAAAATGTGCTTGATATGATAAGAAATGTAATGCAAGGAAAAGATGAAGGTGCAGACAAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG