Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttccattaatttttagtctgtattacttttttatactatatattagccaactaactatattatattaatatatgctcatatatgacttttaacttacagGTGGTGCAACACTCATATTTGACACTGAGCTTGTGGGAGTGAACGACAAAAGTTTAGGCGAAGAAAAAGAAAACTCCGAACTGTAGACAAATCAAAAGAA

Basic information

species Glycine max
transcript GLYMA03G21680.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G21680.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G115757_T02 (Zea mays), 3'ss of exon 5
---tttccattaatttttagtctgtattacttttttatactatatattagccaactaactatattatattaatatatgctcatatatgacttttaacttacagGTGGTGCAACACTCATATTTGACACTGAGCTTGTGGGAGTGAACGACAAAAGTTTAGGCGAAGAAAAAGAAAACTCCGAACTGTAGACAAATCAAAAGAA
    ||||   |||   |||    |   || |   |  | |      |||   |    ||  |    ||| || |  ||   | |||  ||||   ||| ||||||| ||||| |||||||||||||| |||||||| |  || || |   ||        | ||    | ||    |     |   | |||||| ||   | 
tggattcctgcaatgcctagcac-tgccacctgaatggattcctgcctaggtgaacttctgcaggtcattgatgtgagccattttat--ctttcttcttgcagGTGGAGCAACCCTCATATTTGACACGGAGCTTGTCGCTGTCAATGGAGAACCAACCAACCAATCTGACGAGCTTTAGATTCATCAAACAAATGAATCCAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298174852|gb|HO017961.1|HO017961
EST:     ACCAGCGAAACTTGGCTATGGAGATCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCAACACTCATATTTGACACTGAGCTTGTGGGAGTGAACGACAAAA
genomic: ACCAGCGAAACTTGGCTATGGAGATCAGGGTTCCCCACCCACTATTCCAGgtaatttatc ... taacttacagGTGGTGCAACACTCATATTTGACACTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|207734989|gb|GD710756.1|GD710756
EST:     ACCAGCGAAACTTGGCTATGGAGATCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCAACACTCATATTTGACACTGAGCTTGTGGGAGTGAACGACAAAA
genomic: ACCAGCGAAACTTGGCTATGGAGATCAGGGTTCCCCACCCACTATTCCAGgtaatttatc ... taacttacagGTGGTGCAACACTCATATTTGACACTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|58020884|gb|CX707626.1|CX707626
EST:     ACCAGCGAAACTTGGCTATGGAGATCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCAACACTCATATTTGACACTGAGCTTGTGGGAGTGAACGACAAAA
genomic: ACCAGCGAAACTTGGCTATGGAGATCAGGGTTCCCCACCCACTATTCCAGgtaatttatc ... taacttacagGTGGTGCAACACTCATATTTGACACTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|193711711|gb|FK648300.1|FK648300
EST:     ACCAGCGAAACTTGGCTATGGAGATCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCAACACTCATATTTGACACTGAGCTTGTGGGAGTGAACGACAAAA
genomic: ACCAGCGAAACTTGGCTATGGAGATCAGGGTTCCCCACCCACTATTCCAGgtaatttatc ... taacttacagGTGGTGCAACACTCATATTTGACACTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|31465725|gb|CD407753.1|CD407753
EST:     ACCAGCGAAACTTGGCTATGGAGATCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCAACACTCATATTTGACACTGAGCTTGTGGGAGTGAACGACAAAA
genomic: ACCAGCGAAACTTGGCTATGGAGATCAGGGTTCCCCACCCACTATTCCAGgtaatttatc ... taacttacagGTGGTGCAACACTCATATTTGACACTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|31561045|gb|CD486883.1|CD486883
EST:     ACCAGCGAAACTTGGCTATGGAGATCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCAACACTCATATTTGACACTGAGCTTGTGGGAGTGAACGACAAAA
genomic: ACCAGCGAAACTTGGCTATGGAGATCAGGGTTCCCCACCCACTATTCCAGgtaatttatc ... taacttacagGTGGTGCAACACTCATATTTGACACTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|31465087|gb|CD407115.1|CD407115
EST:     ACCAGCGAAACTTGGCTATGGAGATCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCNACACTCATATTTGACACTGAGCTTGTGGGAGTGAACGACAAAA
genomic: ACCAGCGAAACTTGGCTATGGAGATCAGGGTTCCCCACCCACTATTCCAGgtaatttatc ... taacttacagGTGGTGCAACACTCATATTTGACACTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|18734962|gb|BM528486.1|BM528486
EST:     ACCAGCGAAACTTGGCTATGGAGATCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCAACACTCATATTTGACACTGAGCTTGTGGGAGTGAACGACAAAA
genomic: ACCAGCGAAACTTGGCTATGGAGATCAGGGTTCCCCACCCACTATTCCAGgtaatttatc ... taacttacagGTGGTGCAACACTCATATTTGACACTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|193682642|gb|FK623390.1|FK623390
EST:     ACCAGCGAAACTTGGCTATGGAGATCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCAACACTCATATTTGACACTGAGCTTGTGGGAGTGAACGACAAAA
genomic: ACCAGCGAAACTTGGCTATGGAGATCAGGGTTCCCCACCCACTATTCCAGgtaatttatc ... taacttacagGTGGTGCAACACTCATATTTGACACTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|208318828|gb|GE111981.1|GE111981
EST:     ACCAGCGAAACTTGGCTATGGAGATCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCAACACTCATATTTGACACTGAGCTTGTGGGAGTGAACGACAAAA
genomic: ACCAGCGAAACTTGGCTATGGAGATCAGGGTTCCCCACCCACTATTCCAGgtaatttatc ... taacttacagGTGGTGCAACACTCATATTTGACACTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|207734247|gb|GD711091.1|GD711091
EST:     ACCAGCGAAACTTGGCTATGGAGATCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCAACACTCATATTTGACACTGAGCTTGTGGGAGTGAACGACAAAA
genomic: ACCAGCGAAACTTGGCTATGGAGATCAGGGTTCCCCACCCACTATTCCAGgtaatttatc ... taacttacagGTGGTGCAACACTCATATTTGACACTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|58020461|gb|CX707203.1|CX707203
EST:     ACCAGCGAAACTTGGCTATGGAGATCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCAACACTCATATTTGACACTGAGCTTGTGGGAGTGAACGACAAAA
genomic: ACCAGCGAAACTTGGCTATGGAGATCAGGGTTCCCCACCCACTATTCCAGgtaatttatc ... taacttacagGTGGTGCAACACTCATATTTGACACTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|31461804|gb|CD403832.1|CD403832
EST:     ACCAGCGAAACTTGGCTATGGAGATCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCAACACTCATATTTGACACTGAGCTTGTGGGAGTGAACGACAAAA
genomic: ACCAGCGAAACTTGGCTATGGAGATCAGGGTTCCCCACCCACTATTCCAGgtaatttatc ... taacttacagGTGGTGCAACACTCATATTTGACACTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|5687935|gb|AI940950.1|AI940950
EST:     ACCAGCGAAACTTGGCTATGGAGATCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCAACACTCATATTTGACACTGAGCTTGTGGGAGTGAACGACAAAA
genomic: ACCAGCGAAACTTGGCTATGGAGATCAGGGTTCCCCACCCACTATTCCAGgtaatttatc ... taacttacagGTGGTGCAACACTCATATTTGACACTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|31306312|gb|CD391515.1|CD391515
EST:     ACCAGCGAAACTTGGCTATGGAGATCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCAACACTCATATTTGACACTGAGCTTGTGGGAGTGAACGACAAAA
genomic: ACCAGCGAAACTTGGCTATGGAGATCAGGGTTCCCCACCCACTATTCCAGgtaatttatc ... taacttacagGTGGTGCAACACTCATATTTGACACTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|192306620|gb|FG998816.1|FG998816
EST:     ACCAGCGAAACTTGGCTATGGAGATCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCAACACTCATATTTGACACTGAGCTTGTGGGAGTGAATGACAAAA
genomic: ACCAGCGAAACTTGGCTATGGAGATCAGGGTTCCCCACCCACTATTCCAGgtaatttatc ... taacttacagGTGGTGCAACACTCATATTTGACACTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|193540817|gb|FK496021.1|FK496021
EST:     ACCAGCGAAACTTGGCTATGGAGATCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCAACACTCATATTTGACACTGAGCTTGTGGGAGTGAACGACAAAA
genomic: ACCAGCGAAACTTGGCTATGGAGATCAGGGTTCCCCACCCACTATTCCAGgtaatttatc ... taacttacagGTGGTGCAACACTCATATTTGACACTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|19268794|gb|BM885050.1|BM885050
EST:     ACCAGCGAAACTTGGCTATGGAGATCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCAACACTCA
genomic: ACCAGCGAAACTTGGCTATGGAGATCAGGGTTCCCCACCCACTATTCCAGgtaatttatc ... taacttacagGTGGTGCAACACTCA
EST: gi|8284542|gb|BE022110.1|BE022110
EST:     ACCAGCGAAACTTGGCTATGGAGATCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCAACACTCATATGTGACACTGAGCTTGTGGGAGTGAACGACAAAA
genomic: ACCAGCGAAACTTGGCTATGGAGATCAGGGTTCCCCACCCACTATTCCAGgtaatttatc ... taacttacagGTGGTGCAACACTCATATTTGACACTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|193710405|gb|FK648661.1|FK648661
EST:     ACCAGCGAAACTTGGCTATGGAGATCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCAACACTCATATTTGACACTGAGCTTGTGGGAGTGAACGACAAAA
genomic: ACCAGCGAAACTTGGCTATGGAGATCAGGGTTCCCCACCCACTATTCCAGgtaatttatc ... taacttacagGTGGTGCAACACTCATATTTGACACTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|151393707|gb|EV263582.1|EV263582
EST:     ACCAGCGAAACATGGCTATGGAGATCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCAACACTCATATTTGACACTGAGCTTGTGGGAGTGAACGACAAAA
genomic: ACCAGCGAAACTTGGCTATGGAGATCAGGGTTCCCCACCCACTATTCCAGgtaatttatc ... taacttacagGTGGTGCAACACTCATATTTGACACTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|26059181|gb|CA802095.1|CA802095
EST:     ACCAGCGAAACTTGCCTATGGAGATCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCAACACTCATATTTGACACTGAGCTTGTGGGAGTGAACGACAAAA
genomic: ACCAGCGAAACTTGGCTATGGAGATCAGGGTTCCCCACCCACTATTCCAGgtaatttatc ... taacttacagGTGGTGCAACACTCATATTTGACACTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|151393109|gb|EV262984.1|EV262984
EST:     ACCAGCGAAACTTGGCTATGGAGATCAGGGTTCCCCACCCACTATTCCAG                         GCGGTGCAACACTCATATTTGACACTGAGCTTGTGGGAGTGAACGACAAAA
genomic: ACCAGCGAAACTTGGCTATGGAGATCAGGGTTCCCCACCCACTATTCCAGgtaatttatc ... taacttacagGTGGTGCAACACTCATATTTGACACTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|58021248|gb|CX707990.1|CX707990
EST:     ACCAGCGAAACTTGGCTATGGAGATCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCAACACTCATATTTGACACTGAGCTTGTGGGAGTGAACGACAAAA
genomic: ACCAGCGAAACTTGGCTATGGAGATCAGGGTTCCCCACCCACTATTCCAGgtaatttatc ... taacttacagGTGGTGCAACACTCATATTTGACACTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|7640573|gb|AW734935.1|AW734935
EST:     ACCAGCGAAACTTGGCTATGGAGATCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCAACACTCATATTTGACACTGAGCTTGTGGGAGTGAACGACAAAA
genomic: ACCAGCGAAACTTGGCTATGGAGATCAGGGTTCCCCACCCACTATTCCAGgtaatttatc ... taacttacagGTGGTGCAACACTCATATTTGACACTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|31463910|gb|CD405938.1|CD405938
EST:     ACCAGCGAAACTTGGCTATGGAGATCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCAACACTCATATTTGACACTGAGCTTGTGGGAGTGAACGACAAAA
genomic: ACCAGCGAAACTTGGCTATGGAGATCAGGGTTCCCCACCCACTATTCCAGgtaatttatc ... taacttacagGTGGTGCAACACTCATATTTGACACTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|19054065|gb|BM732732.1|BM732732
EST:     ACCAGCGAAACTTGGCTATGGAGATCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCAACACT
genomic: ACCAGCGAAACTTGGCTATGGAGATCAGGGTTCCCCACCCACTATTCCAGgtaatttatc ... taacttacagGTGGTGCAACACT
EST: gi|14258994|gb|BG881902.1|BG881902
EST:     ACCAGCGAAACTTGGCTATGGAGATCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCAACA
genomic: ACCAGCGAAACTTGGCTATGGAGATCAGGGTTCCCCACCCACTATTCCAGgtaatttatc ... taacttacagGTGGTGCAACA
EST: gi|31476666|gb|CD418694.1|CD418694
EST:     ACCAGCGAAACTTGGCTATGGAGATCAGGGTTCCCCACCCCCTATTCCAG                         GTGGTGCTACACTCATATTTGACACTGAGCTTGTGGGAGTGAACGACCAAA
genomic: ACCAGCGAAACTTGGCTATGGAGATCAGGGTTCCCCACCCACTATTCCAGgtaatttatc ... taacttacagGTGGTGCAACACTCATATTTGACACTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|193565919|gb|FK526354.1|FK526354
EST:     ACCAGCGAAACTTGGCTATGGAGATCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCAACACTCATATTTGACACTGAGCTTGTGGGAGTGAACGACAAAA
genomic: ACCAGCGAAACTTGGCTATGGAGATCAGGGTTCCCCACCCACTATTCCAGgtaatttatc ... taacttacagGTGGTGCAACACTCATATTTGACACTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|207754114|gb|GD723824.1|GD723824
EST:     ACCAGCGAAACTTGGCTATGGAGATCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCAACACTCATATTTGACACTGAGCTTGTGGGAGTGAACGACAAAA
genomic: ACCAGCGAAACTTGGCTATGGAGATCAGGGTTCCCCACCCACTATTCCAGgtaatttatc ... taacttacagGTGGTGCAACACTCATATTTGACACTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|8826541|gb|BE210271.1|BE210271
EST:     ACCAGCGAAACTTGGCTATGGAGATCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCAACACTCATATTAGACACTGAGCTTGTGGGAGTGAACGACAAAA
genomic: ACCAGCGAAACTTGGCTATGGAGATCAGGGTTCCCCACCCACTATTCCAGgtaatttatc ... taacttacagGTGGTGCAACACTCATATTTGACACTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|192306619|gb|FG998815.1|FG998815
EST:     ACCAGCGAAACTTGGCTATGGAGATCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCAACACTCATATTTGACACTGAGCTTGTGGGAGTGAATGACAAAA
genomic: ACCAGCGAAACTTGGCTATGGAGATCAGGGTTCCCCACCCACTATTCCAGgtaatttatc ... taacttacagGTGGTGCAACACTCATATTTGACACTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|31305716|gb|CD390919.1|CD390919
EST:     ACCAGCGAAACTTGGCTATGGAGATCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCAACACTCATATTTGACACTGAGCTTGTGGGAGTGAACGACAAAA
genomic: ACCAGCGAAACTTGGCTATGGAGATCAGGGTTCCCCACCCACTATTCCAGgtaatttatc ... taacttacagGTGGTGCAACACTCATATTTGACACTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|31460163|gb|CD402551.1|CD402551
EST:     ACCAGCGAAACTTGGCTATGGAGATCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCAACACTCATATTTGACACTGAGCTTGTGGGAGTGAACGACAAAA
genomic: ACCAGCGAAACTTGGCTATGGAGATCAGGGTTCCCCACCCACTATTCCAGgtaatttatc ... taacttacagGTGGTGCAACACTCATATTTGACACTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|31455863|gb|CD397891.1|CD397891
EST:     AGGGTTCCCCACCCACTATTCCAG                         GTGGTGCAACACTCATATTTGACACTGTAGCTTGTGGGAG
genomic: AGGGTTCCCCACCCACTATTCCAGgtaatttatc ... taacttacagGTGGTGCAACACTCATATTTGACACTG-AGCTTGTGGGAG
EST: gi|6341393|gb|AW164217.1|AW164217
EST:     ACCAGCGAAACTTGGCTATGGAGATCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCAACACTCATATTTGACACTGAGCTTGTGGGAGTGAACGACAAAA
genomic: ACCAGCGAAACTTGGCTATGGAGATCAGGGTTCCCCACCCACTATTCCAGgtaatttatc ... taacttacagGTGGTGCAACACTCATATTTGACACTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|7145658|gb|AW507580.1|AW507580
EST:     ACCAGCGAAACTTGGCTATGGAGATCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCAACACTCATATTTGACACTGAGCTTGTGGGAGTGAACGACAAAA
genomic: ACCAGCGAAACTTGGCTATGGAGATCAGGGTTCCCCACCCACTATTCCAGgtaatttatc ... taacttacagGTGGTGCAACACTCATATTTGACACTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|208064570|gb|GD863956.1|GD863956
EST:     ACCAGCGAAACTTGGCTATGGAGATCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCAACACTCATATTTGACACTGAGCTTGTGGGAGTGAACGACAAAA
genomic: ACCAGCGAAACTTGGCTATGGAGATCAGGGTTCCCCACCCACTATTCCAGgtaatttatc ... taacttacagGTGGTGCAACACTCATATTTGACACTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|193714622|gb|FK649341.1|FK649341
EST:     CGAAACTTGGCTATGGAGATCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCAACACTCATATTTGACACTGAGCTTGTGGGAGTGAACGACAAAA
genomic: CGAAACTTGGCTATGGAGATCAGGGTTCCCCACCCACTATTCCAGgtaatttatc ... taacttacagGTGGTGCAACACTCATATTTGACACTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|31312013|gb|CD397216.1|CD397216
EST:     ACCAGCGAAACTTGGCTATGGAGATCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCAACACTCATATTTGACACTGAGCTTGTGGGAGTGAACGACACCC
genomic: ACCAGCGAAACTTGGCTATGGAGATCAGGGTTCCCCACCCACTATTCCAGgtaatttatc ... taacttacagGTGGTGCAACACTCATATTTGACACTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|151410901|gb|EV280716.1|EV280716
EST:     ACCAGCGAAACTTGGCTATGGAGATCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCAACACTCATATTTGACACTGAGCTTGTGGGAGTGAACGACAAAA
genomic: ACCAGCGAAACTTGGCTATGGAGATCAGGGTTCCCCACCCACTATTCCAGgtaatttatc ... taacttacagGTGGTGCAACACTCATATTTGACACTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|19054231|gb|BM732898.1|BM732898
EST:     ACCAGCGAAACTTGGCTATGGAGATCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCAACACTC
genomic: ACCAGCGAAACTTGGCTATGGAGATCAGGGTTCCCCACCCACTATTCCAGgtaatttatc ... taacttacagGTGGTGCAACACTC
EST: gi|22523442|gb|BU082253.1|BU082253
EST:     ACCAGCGAAACTTGGCTATGGAGATCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCAACACTCATATTTGACACTGAGCTTGTGGGAGTGAACGACAAAA
genomic: ACCAGCGAAACTTGGCTATGGAGATCAGGGTTCCCCACCCACTATTCCAGgtaatttatc ... taacttacagGTGGTGCAACACTCATATTTGACACTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|208230478|gb|GE031757.1|GE031757
EST:     GATCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCAACACTCATATTTGACACTGAGCTTGTGGGAGTGAACGACAAAA
genomic: GATCAGGGTTCCCCACCCACTATTCCAGgtaatttatc ... taacttacagGTGGTGCAACACTCATATTTGACACTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|207700958|gb|GD681741.1|GD681741
EST:     GATCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCAACACTCATATTTGACACTGAGCTTGTGGGAGTGAACGACAAAA
genomic: GATCAGGGTTCCCCACCCACTATTCCAGgtaatttatc ... taacttacagGTGGTGCAACACTCATATTTGACACTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|17022453|gb|BM093487.1|BM093487
EST:     ACCAGCGAAACTTGGCTATGGAGATCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCAACACTCATATTTGACACTGAGCTTGTGGGAGTGAACGACAAAA
genomic: ACCAGCGAAACTTGGCTATGGAGATCAGGGTTCCCCACCCACTATTCCAGgtaatttatc ... taacttacagGTGGTGCAACACTCATATTTGACACTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|151408353|gb|EV278161.1|EV278161
EST:     ACCAGCGAAACTTGGCTATGGAGATCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCAACACTCATATTTGACACTGAGCTTGTGGGAGTGAACGACAAAA
genomic: ACCAGCGAAACTTGGCTATGGAGATCAGGGTTCCCCACCCACTATTCCAGgtaatttatc ... taacttacagGTGGTGCAACACTCATATTTGACACTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|193653525|gb|FK599523.1|FK599523
EST:     GGTTCCCCACCCACTATTCCAG                         GTGGTGCAACACTCATATTTGACACTGAGCTTGTGGGAGTGAACGACAAAA
genomic: GGTTCCCCACCCACTATTCCAGgtaatttatc ... taacttacagGTGGTGCAACACTCATATTTGACACTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|193414617|gb|FK381327.1|FK381327
EST:     ACCAGCGAAACTTGGCTATGGAGATCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCAACACTCATATTTGACACTGAGCTTGTGGGAGTGAACGACAAAA
genomic: ACCAGCGAAACTTGGCTATGGAGATCAGGGTTCCCCACCCACTATTCCAGgtaatttatc ... taacttacagGTGGTGCAACACTCATATTTGACACTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|31458827|gb|CD400855.1|CD400855
EST:     ACCAGCGAAACTTGGCTATGGAGATCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCAACACTCATATTTGACACTGAGCTTGTGGGAGTGAACGACAAAA
genomic: ACCAGCGAAACTTGGCTATGGAGATCAGGGTTCCCCACCCACTATTCCAGgtaatttatc ... taacttacagGTGGTGCAACACTCATATTTGACACTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|208189710|gb|GD990946.1|GD990946
EST:     ACCAGCGAAACTTGGCTATGGAGATCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCAACACTCATATTTGACACTGAGCTTGTGGGAGTGAACG-CAAAA
genomic: ACCAGCGAAACTTGGCTATGGAGATCAGGGTTCCCCACCCACTATTCCAGgtaatttatc ... taacttacagGTGGTGCAACACTCATATTTGACACTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|208239267|gb|GE037219.1|GE037219
EST:     ACCAGCGAAACTTGGCTATGGAGATCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCAACACTCATATTTGACACTGAGCTTGTGGGAGTGAACGACAAAA
genomic: ACCAGCGAAACTTGGCTATGGAGATCAGGGTTCCCCACCCACTATTCCAGgtaatttatc ... taacttacagGTGGTGCAACACTCATATTTGACACTGAGCTTGTGGGAGTGAACGACAAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agccaactaactatattatattaatatatgctcatatatgacttttaacttacagGTGGTGCAACACTCATATTTGACACTGAGCTTGTGGGAGTGAACGACAAAAGTTTAGGCGAAGAAAAAGAAAACTCCGAACTGTAGACAAATCAAAAGAA
                                         ctttt  CT-rich tract
           tatattatattaatat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tttccattaatttttagtctgtattacttttttatactatatattagccaactaactatattatattaatatatgctcatatatgacttttaacttacagGTGGTGCAACACTCATATTTGACACTGAGCTTGTGGGAGTGAACGACAAAAGTTTAGGCGAAGAAAAAGAAAACTCCGAACTGTAGACAAATCAAAAGAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA