1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tttctgtttagtttttggtaaatagaaatagttatctatccttaacttgtcttgcaaatatcttatttacttgacctaaatatagtctttgttgtttcagTGGCATGGGTCCCGATTTTCGAGTTTTGGTTCGAAAAAGCAGGAAACAAGCTGAGCAGTATCATCGGTTATATAAA
species | Glycine max |
transcript | GLYMA03G16660.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAG TGGCATGGGTCCCGATTTTCGAGTTTTGGTTCGAAAAAGCAGGAAACAAGCEST: gi|151413158|gb|EV282966.1|EV282966
genomic: GTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAGgtttgtttct ... gttgtttcagTGGCATGGGTCCCGATTTTCGAGTTTTGGTTCGAAAAAGCAGGAAACAAGC
EST: GTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAG TGGCATGGGTCCCGATTTTCGAGTTTTGGTTCGAAAAAGCAGGAAACAAGCEST: gi|9899371|gb|BE608339.1|BE608339
genomic: GTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAGgtttgtttct ... gttgtttcagTGGCATGGGTCCCGATTTTCGAGTTTTGGTTCGAAAAAGCAGGAAACAAGC
EST: GTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAG TGGCATGGGTCCCGATTTTCGAGTTTTGGTTCGAAAAAGCANGAAACAAGC
genomic: GTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAGgtttgtttct ... gttgtttcagTGGCATGGGTCCCGATTTTCGAGTTTTGGTTCGAAAAAGCAGGAAACAAGC
cttgtcttgcaaatatcttatttacttgacctaaatatagtctttgttgtttcagTGGCATGGGTCCCGATTTTCGAGTTTTGGTTCGAAAAAGCAGGAAACAAGCTGAGCAGTATCATCGGTTATATAAA
acctaaa putative branch site (score: 3)
tctttgtt putative PPT
aaatatcttatttact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttctgtttagtttttggtaaatagaaatagttatctatccttaacttgtcttgcaaatatcttatttacttgacctaaatatagtctttgttgtttcagTGGCATGGGTCCCGATTTTCGAGTTTTGGTTCGAAAAAGCAGGAAACAAGCTGAGCAGTATCATCGGTTATATAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG