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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgatttaaaagtgaccggaggctagcattgtggagcaaacatttctcctttatatttgtaaataatttatgtctttttttgtgcagACTATTTTGAAAATTCCAGGATTCACTGACAATGTTGTAACTCATCTTCTTGCTGGTCTTGGGGCAGGGTTTTTCGCCGTCTGTATTGGCTCCCCAGTTG

Basic information

species Glycine max
transcript GLYMA03G14780.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G14780.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv08s0007g01700.t01 (Vitis vinifera), 3'ss of exon 5
gtgatttaaaagtgaccggaggctagcattgtggagcaaacatttctcctttata---------tttgtaaata-atttatgtcttttttt--gtgcagACTATTTTGAAAATTCCAGGATTCACTGACAATGTTGTAACTCATCTTCTTGCTGGTCTTGGGGCAGGGTTTTTCGCCGTCTGTATTGGCTCCCCAGTTG
            || |   |   |  |||  | |    |  |||| |   ||||          ||||||| || ||||   ||||| |||   ||||||| ||||||||||||||||| ||||  || |||||| | ||||||||  | |||||| | ||||| || |||||||| ||||||||||||||||||||||
----------gttgtctacaaagtttcatcattggtggactatttttgtcttatgatgtgcaactttgtaattatatttgcctctttatttcaatgcagACGATTTTGAAAATTCCAGGGTTCAAAGATAATGTTTTGACTCATCTCTTAGCTGGTTTGGGGGCGGGTTTTTTCGCAGTCTGTATTGGCTCCCCAGTTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10848284|gb|BF071710.1|BF071710
EST:     ATGGTATCATCAATGCTGCCGAATTAGCCAGCTATGATCAAGTGAAACAG                         ACTATTTTGAAAATTCCAGGATTCACTGACAATGTTGTAACTCATCTTCTT
genomic: ATGGTATCATCAATGCTGCCGAATTAGCCAGCTATGATCAAGTGAAACAGgtgatttaaa ... ttttgtgcagACTATTTTGAAAATTCCAGGATTCACTGACAATGTTGTAACTCATCTTCTT
EST: gi|193663465|gb|FK602321.1|FK602321
EST:     ATGGTATCATCAATGCTGCCGAATTAGCCAGCTATGATCAAGTGAAACAG                         ACTATTTTGAAAATTCCAGGATTCACTGACAATGTTG
genomic: ATGGTATCATCAATGCTGCCGAATTAGCCAGCTATGATCAAGTGAAACAGgtgatttaaa ... ttttgtgcagACTATTTTGAAAATTCCAGGATTCACTGACAATGTTG
EST: gi|19053009|gb|BM731676.1|BM731676
EST:     ATGGTATCATCAATGCTGCCGAATTAGCCAGCTATGATCAAGTGAAACAG                         ACTATTTTGAAAATTCCAGGATTCACTGACAATGTTGTAACTCATCTTCTT
genomic: ATGGTATCATCAATGCTGCCGAATTAGCCAGCTATGATCAAGTGAAACAGgtgatttaaa ... ttttgtgcagACTATTTTGAAAATTCCAGGATTCACTGACAATGTTGTAACTCATCTTCTT
EST: gi|22930316|gb|BU547463.1|BU547463
EST:     ATGGTATCATCAATGCTGCCGAATTAGCCAGCTATGATCAAGTGAAACAG                         ACTATTTTGAAAATTCCAGGATTCACTGACAATGTTGTAACTCATCTTCTT
genomic: ATGGTATCATCAATGCTGCCGAATTAGCCAGCTATGATCAAGTGAAACAGgtgatttaaa ... ttttgtgcagACTATTTTGAAAATTCCAGGATTCACTGACAATGTTGTAACTCATCTTCTT
EST: gi|15286162|gb|BI470053.1|BI470053
EST:     ATGGTATCATCAATGCTGCCGAATTAGCCAGCTATGATCAAGTGAAACAG                         ACTATTTTGAAAATTCCAGGATTCACTGACAATGTTGTAACTCATCTTCTT
genomic: ATGGTATCATCAATGCTGCCGAATTAGCCAGCTATGATCAAGTGAAACAGgtgatttaaa ... ttttgtgcagACTATTTTGAAAATTCCAGGATTCACTGACAATGTTGTAACTCATCTTCTT
EST: gi|213607924|gb|DB983879.1|DB983879
EST:     CAATGCTGCCGAATTAGCCAGCTATGATCAAGTGAAACAG                         ACTTTTTTGAAAATTCCAAGATTCACTGACAATGTTGTAACTCATCTTCTT
genomic: CAATGCTGCCGAATTAGCCAGCTATGATCAAGTGAAACAGgtgatttaaa ... ttttgtgcagACTATTTTGAAAATTCCAGGATTCACTGACAATGTTGTAACTCATCTTCTT
EST: gi|151396786|gb|EV266659.1|EV266659
EST:     ATGGTATCATCAATGCTGCCGAATTAGCCAGCTATGATCAAGTGAAACAG                         ACTATTTTGAAAATTCCAGGATTCACTGACAATGTTGTAACTCATCCTCTT
genomic: ATGGTATCATCAATGCTGCCGAATTAGCCAGCTATGATCAAGTGAAACAGgtgatttaaa ... ttttgtgcagACTATTTTGAAAATTCCAGGATTCACTGACAATGTTGTAACTCATCTTCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggagcaaacatttctcctttatatttgtaaataatttatgtctttttttgtgcagACTATTTTGAAAATTCCAGGATTCACTGACAATGTTGTAACTCATCTTCTTGCTGGTCTTGGGGCAGGGTTTTTCGCCGTCTGTATTGGCTCCCCAGTTG
                                  tttatgtcttttttt  CT-rich tract
                 tttatatttgtaaata  TA-rich tract