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...ctcacatttcaattttctgaatgtatttcatatttgcaaagctgtctgggcttcagattaaatccactagttcttgtggttgatcttaattgtttttcagATACATTCCAAGATACACCTTTAGCTGGCTGGTGCAACCCATGTGGTGGGTCATAA
species | Glycine max |
transcript | GLYMA03G14200.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TATTGTCATGTCCTATCACACCCACGTACCAGT ATACATTCCAAGATACACCTTTAGCTGGCTGGTGCAACCCATGTGGTGGGTEST: gi|15664172|gb|BI701543.1|BI701543
genomic: TATTGTCATGTCCTATCACACCCACGTACCAGTgtaagttgca ... tgtttttcagATACATTCCAAGATACACCTTTAGCTGGCTGGTGCAACCCATGTGGTGGGT
EST: AAGCTTCTGAGTGTTCCTATTGTCATGTCCTATCACACCCACGTACCAGT ATACATTCCAAGATACACCTTTAGCTGGCTGGTGCAACCCATGTGGTGGGT
genomic: AAGCTTCTGAGTGTTCCTATTGTCATGTCCTATCACACCCACGTACCAGTgtaagttgca ... tgtttttcagATACATTCCAAGATACACCTTTAGCTGGCTGGTGCAACCCATGTGGTGGGT
ctgggcttcagattaaatccactagttcttgtggttgatcttaattgtttttcagATACATTCCAAGATACACCTTTAGCTGGCTGGTGCAACCCATGTGGTGGGTCATAA
tcttaat putative branch site (score: 3)
ttgtttttc CT-rich tract
atcttaattgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctcacatttcaattttctgaatgtatttcatatttgcaaagctgtctgggcttcagattaaatccactagttcttgtggttgatcttaattgtttttcagATACATTCCAAGATACACCTTTAGCTGGCTGGTGCAACCCATGTGGTGGGTCATAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
ctcacat
- - - - - - - - - gaatgta
- - - - - - - - - - - - - - - - tttgcaa
- - - - - - - - - - - - - - - - - - - - gctgtct
- - - - - - - - - - - - - - - - - - - - - - - - -gcttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccactag