1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaagtatttatatgtcaattgctctatgtctaaactataatgtatctgaaggaaaagtgaaaatatactcaagttccatttgatggtggtggtgattgatagGGATGGAATTCATTTGTCAAATGAGGGAAGCAAGATAGTGGCAAAAGAGATATTGAAAGTCCTCAGAGAAGCAGACTGGGAACCTAGTCTGGACTGGAAG
species | Glycine max |
transcript | GLYMA03G07880.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTCTGGTCTGCACTCCGGCAAAGGCATGACTGGTTAGATGTTTGCTTTAC GGATGGAATTCATTTGTCAAATGAGGGAAGCAAGATAGTGGCAAAAGAGATEST: gi|5510105|gb|AI856489.1|AI856489
genomic: CTCTGGTCTGCACTCCGGCAAAGGCATGACTGGTTAGATGTTTGCTTTACgtaagtattt ... tgattgatagGGATGGAATTCATTTGTCAAATGAGGGAAGCAAGATAGTGGCAAAAGAGAT
EST: CTCTGGTCTGCACTCCGGCAAAGGCATGACTGGTTAGATGTTTGCTTTAC GGATGGAATTCATTTGTCAAATGAGGGAAGCAAGATAGTGGCAAAAGAGATEST: gi|5510115|gb|AI856499.1|AI856499
genomic: CTCTGGTCTGCACTCCGGCAAAGGCATGACTGGTTAGATGTTTGCTTTACgtaagtattt ... tgattgatagGGATGGAATTCATTTGTCAAATGAGGGAAGCAAGATAGTGGCAAAAGAGAT
EST: CTCTGGTCTGCACTCCGGCAAAGGCATGACTGGTTAGATGTTTGCTTTAC GGATGGAATTCATTTGTCAAATGAGGGAAGCAAGATAGTGGCAAAAGAGAT
genomic: CTCTGGTCTGCACTCCGGCAAAGGCATGACTGGTTAGATGTTTGCTTTACgtaagtattt ... tgattgatagGGATGGAATTCATTTGTCAAATGAGGGAAGCAAGATAGTGGCAAAAGAGAT
gaaggaaaagtgaaaatatactcaagttccatttgatggtggtggtgattgatagGGATGGAATTCATTTGTCAAATGAGGGAAGCAAGATAGTGGCAAAAGAGATATTGAAAGTCCTCAGAGAAGCAGACTGGGAACCTAGTCTGGACTGGAAG
atttgat putative branch site (score: 5)
aaaagtgaaaatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtatttatatgtcaattgctctatgtctaaactataatgtatctgaaggaaaagtgaaaatatactcaagttccatttgatggtggtggtgattgatagGGATGGAATTCATTTGTCAAATGAGGGAAGCAAGATAGTGGCAAAAGAGATATTGAAAGTCCTCAGAGAAGCAGACTGGGAACCTAGTCTGGACTGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG