Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgtatgttgaaaggctagatttgtaatttattgttacagttatgtaactacacaagtggccgtgcatattcttatgcttttttcttcttttcctgacagAACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGTAAAATTGTTGAGGGTGTTCTTAGCCACCAAATGAAACAGTTTGTGATTG

Basic information

species Glycine max
transcript GLYMA03G07420.3
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G07420.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv08s0217g00020.t01 (Vitis vinifera), 3'ss of exon 4
ttgtatgttgaaaggctagatttgtaat-ttattgttacagttatgtaac-tacacaagtggccgtgcatattctta-tgcttttttcttcttttcctgacagAACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGTAAAATTGTTGAGGGTGTTCTTAGCCACCAAATGAAACAGTTTGTGATTG
     ||| |  |  ||  |||  || | ||  ||||    ||||||  | |   ||  ||   |   | |  || | |     | |||  || |  || ||||| ||||||||||| ||||||||||||||| |||| || || ||||| || |||||||| || ||||| || ||||||||  | || ||||||||||| |
---attgtggttaatctttattattattgttggtgttgtttttatgtgccctgttcatttgattggtaaaaagctgagttgcagtctctctttataatggcagAATAAGGATGTAACAGAAGCAATTCAGAAGGTTGCTGCTGCCTATGACTGCAAAATTGTCGAAGGTGTACTCAGCCACCAGCTAAAGCAGTTTGTGATAG

upper sequence: GLYMA03G07420.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv06s0004g06870.t01 (Vitis vinifera), 3'ss of exon 5
--ttgtatgttgaaaggctagatttgtaatttattgttacagttatgtaactacacaagtggccgtgcatattcttatgcttttttcttcttttcctgacagAACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGTAAAATTGTTGAGGGTGTTCTTAGCCACCAAATGAAACAGTTTGTGATTG
  ||  | | | |     | | || || |||     |||    | |||       ||| |   | |   |||| |  |   |   | || |  |  || ||||||||||| ||||| || || ||||||||| | || || || ||||| || || |||||||| |||||||| || |||||| | ||||||||||||||||
ttttacacgattatcaaat-ggttggtcattagaatttatgcatgtgtttactttcaatttttc-tctttattttgttcactaagttttgtggttgtggcagAACAAGGAAGTAACAGATGCTATTCAGAAGGTGGCTGCTGCCTATGACTGCAAGATTGTTGAAGGTGTTCTCAGTCACCAACTAAAACAGTTTGTGATTG

upper sequence: GLYMA03G07420.1 (Glycine max), 3'ss of exon 5
lower sequence: PP1S119_137V6.1 (Physcomitrella patens), 3'ss of exon 4
ttgtatgttgaaaggctagatttgtaatttattgttacagt-tatgtaactacacaagtggccgtgcatattcttatgcttttttcttcttttcctgacagAACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGTAAAATTGTTGAGGGTGTTCTTAGCCACCAAATGAAACAGTTTGTGATTG
|  ||| |     |   || | | |  |  |||| | | || ||||  |||   ||   | | |    |    |||  ||| ||       |     ||||||||| || ||||| ||||| ||||||||| | || || || || || ||||| |||| |||||||||  | || || |||||||||||||||||||| |
tcctatttcctctgcgcagttatctt-tcaattggtcctgtatatgatacttgtcattagacaggctcttggattaaacttattgtggaactgttgtacagAACAAAGACGTAACGGAAGCCATTCAGAAGGTGGCTGCTGCATACGACTGTAAGATTGCTGAGGGTGTGTTGAGTCATCAAATGAAACAGTTTGTGATCG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193306173|gb|FK272342.1|FK272342
EST:     CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAG                         AACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGAATTA
genomic: CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGA-TT-
EST: gi|193678380|gb|FK617930.1|FK617930
EST:     CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAG                         AACAAGGATGTAACTGAAGCAATTCAGAAGATT
genomic: CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACTGAAGCAATTCAGAAGATT
EST: gi|208192458|gb|GD988822.1|GD988822
EST:     CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGACCTGGAAGGAAG                         AACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
genomic: CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
EST: gi|193460248|gb|FK426695.1|FK426695
EST:     CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAG                         AACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
genomic: CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
EST: gi|213616512|gb|DB965710.1|DB965710
EST:     CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAG                         AACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTG
genomic: CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTG
EST: gi|193717666|gb|FK652924.1|FK652924
EST:     CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAG                         AACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
genomic: CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
EST: gi|193609718|gb|FK560718.1|FK560718
EST:     CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAG                         AACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
genomic: CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
EST: gi|193633942|gb|FK581078.1|FK581078
EST:     CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAG                         AACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
genomic: CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
EST: gi|193340733|gb|FK308690.1|FK308690
EST:     CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAG                         AACAAGGATGTAACTGAAGCAATTACAAGAAGATTGCCGCAGCGTATGATT
genomic: CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACTGAAGCAATT-C-AGAAGATTGCCGCAGCGTATGATT
EST: gi|193305022|gb|FK269035.1|FK269035
EST:     CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGGAG                         AACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
genomic: CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
EST: gi|208055899|gb|GD851996.1|GD851996
EST:     CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAG                         AACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
genomic: CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
EST: gi|207729311|gb|GD706773.1|GD706773
EST:     CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAG                         AACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
genomic: CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
EST: gi|208171021|gb|GD969304.1|GD969304
EST:     CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAG                         AACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
genomic: CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
EST: gi|193635361|gb|FK582532.1|FK582532
EST:     CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAG                         AACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
genomic: CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
EST: gi|193732365|gb|FK668355.1|FK668355
EST:     CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAG                         AACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGTATTT
genomic: CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATG-ATT-
EST: gi|208171949|gb|GD969854.1|GD969854
EST:     CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAG                         AACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
genomic: CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
EST: gi|193639633|gb|FK590074.1|FK590074
EST:     CCTGGAAGGAAG                         AACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
genomic: CCTGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
EST: gi|208316187|gb|GE117427.1|GE117427
EST:     CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAG                         AACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
genomic: CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
EST: gi|208098553|gb|GD896906.1|GD896906
EST:     CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAG                         AACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
genomic: CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
EST: gi|208248905|gb|GE046362.1|GE046362
EST:     CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAG                         AACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGA-TGT
genomic: CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
EST: gi|208171402|gb|GD971085.1|GD971085
EST:     CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAG                         AACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTAG
genomic: CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATT-G
EST: gi|207806198|gb|GD777919.1|GD777919
EST:     CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAG                         AACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
genomic: CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
EST: gi|208329460|gb|GE132550.1|GE132550
EST:     CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAG                         AACAAGGATGTAACTGAAGCTAATTCAGAAGATTGCCGCAGCGTATGATTG
genomic: CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACTGAAGC-AATTCAGAAGATTGCCGCAGCGTATGATTG
EST: gi|193594472|gb|FK548949.1|FK548949
EST:     CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAG                         AACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
genomic: CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
EST: gi|193388998|gb|FK354821.1|FK354821
EST:     CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAG                         AACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
genomic: CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
EST: gi|208181750|gb|GD978545.1|GD978545
EST:     CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAG                         AACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
genomic: CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
EST: gi|207698371|gb|GD681352.1|GD681352
EST:     CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAG                         AACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
genomic: CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
EST: gi|14009221|gb|BG725825.1|BG725825
EST:     CAAACACCGCCGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAG                         AACAAGGATGTAACTGAAGCAATTCAGAAGATCGCCGCAGCGTATGATTGT
genomic: CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
EST: gi|208129573|gb|GD928929.1|GD928929
EST:     CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAG                         AACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
genomic: CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
EST: gi|192330310|gb|FK020580.1|FK020580
EST:     CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAG                         AACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
genomic: CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
EST: gi|207805082|gb|GD778675.1|GD778675
EST:     CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAG                         A
genomic: CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAGgtaattatat ... ttcctgacag-
EST: gi|207805082|gb|GD778675.1|GD778675
EST:     CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAG                         A
genomic: CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAGgtaattatat ... ttcctgacag-
EST: gi|208307621|gb|GE107593.1|GE107593
EST:     CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAG                         AACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
genomic: CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
EST: gi|208145625|gb|GD942732.1|GD942732
EST:     CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAG                         AACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
genomic: CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
EST: gi|207803688|gb|GD772717.1|GD772717
EST:     CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAG                         AACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
genomic: CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
EST: gi|208217440|gb|GE010726.1|GE010726
EST:     CAAACACCGCTGCCGAGGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAG                         AACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
genomic: CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
EST: gi|207708373|gb|GD691371.1|GD691371
EST:     CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAG                         AACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
genomic: CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
EST: gi|208161462|gb|GD959674.1|GD959674
EST:     CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAG                         AACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
genomic: CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
EST: gi|208341205|gb|GE135037.1|GE135037
EST:     CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAG                         AACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
genomic: CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
EST: gi|207747541|gb|GD720246.1|GD720246
EST:     CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAG                         AACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
genomic: CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
EST: gi|193363761|gb|FK330477.1|FK330477
EST:     CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAG                         AACAAGGATGTAACTGAAGCAATTCAAGAAGATTGCCGCAGCGTATGATTG
genomic: CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACTGAAGCAATTCA-GAAGATTGCCGCAGCGTATGATTG
EST: gi|208072056|gb|GD871514.1|GD871514
EST:     CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAG                         AACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
genomic: CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
EST: gi|193511818|gb|FK472195.1|FK472195
EST:     CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAG                         AACAAGGATGTAACTGAAGCAATTC
genomic: CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACTGAAGCAATTC
EST: gi|208198350|gb|GD997569.1|GD997569
EST:     CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAG                         AACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
genomic: CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
EST: gi|193536766|gb|FK491826.1|FK491826
EST:     CCTGGAAGGAAG                         AACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
genomic: CCTGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
EST: gi|193474294|gb|FK441999.1|FK441999
EST:     CCTGG-AGGAAG                         AACAAGGATGTAACTGAAGCAATTTCAGAAGATTGCCGCAGCGTATGATTG
genomic: CCTGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACTGAAGCAA-TTCAGAAGATTGCCGCAGCGTATGATTG
EST: gi|193335798|gb|FK299728.1|FK299728
EST:     CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAG                         AACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
genomic: CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
EST: gi|208209624|gb|GE004343.1|GE004343
EST:     CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAG                         AACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
genomic: CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
EST: gi|193448753|gb|FK413758.1|FK413758
EST:     CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAG                         AACAAGGATGTAATTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
genomic: CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
EST: gi|193364896|gb|FK333153.1|FK333153
EST:     CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAG                         AACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
genomic: CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
EST: gi|208336641|gb|GE135087.1|GE135087
EST:     CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAG                         AACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
genomic: CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
EST: gi|193437411|gb|FK401696.1|FK401696
EST:     CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAG                         AACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
genomic: CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
EST: gi|208086281|gb|GD879399.1|GD879399
EST:     CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAG                         AACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
genomic: CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
EST: gi|208149404|gb|GD948906.1|GD948906
EST:     CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAG                         AACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
genomic: CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
EST: gi|13479974|gb|BG509317.1|BG509317
EST:     CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAG                         AACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
genomic: CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
EST: gi|151408709|gb|EV278517.1|EV278517
EST:     CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAAGCCTGGAAGGAAG                         AACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
genomic: CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
EST: gi|208263653|gb|GE061169.1|GE061169
EST:     CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAG                         AACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
genomic: CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
EST: gi|208146249|gb|GD948354.1|GD948354
EST:     CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAG                         AACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
genomic: CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
EST: gi|207799556|gb|GD770053.1|GD770053
EST:     CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAG                         AACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
genomic: CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
EST: gi|213591699|gb|DB969799.1|DB969799
EST:     CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAG                         AACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
genomic: CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
EST: gi|207696583|gb|GD676380.1|GD676380
EST:     CCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAG                         AACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
genomic: CCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
EST: gi|193426003|gb|FK390346.1|FK390346
EST:     CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAG                         A
genomic: CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAGgtaattatat ... ttcctgacag-
EST: gi|193426003|gb|FK390346.1|FK390346
EST:     CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAG                         A
genomic: CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAGgtaattatat ... ttcctgacag-
EST: gi|208127494|gb|GD924820.1|GD924820
EST:     CAAACA-C-C-GCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAG                         AACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
genomic: CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
EST: gi|208212478|gb|GE014379.1|GE014379
EST:     CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAG                         AACAAGGNTGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
genomic: CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
EST: gi|208204475|gb|GE007826.1|GE007826
EST:     CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAG                         AACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
genomic: CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
EST: gi|193360738|gb|FK326390.1|FK326390
EST:     CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCCGGAAGGAAG                         AACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
genomic: CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
EST: gi|193526880|gb|FK487178.1|FK487178
EST:     CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAG                         AACAAGGATGTAACTAAGAAAGCAATTCAGAAGATTGCCGCAGCGTATGAT
genomic: CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACT--G-AAGCAATTCAGAAGATTGCCGCAGCGTATGAT
EST: gi|208147405|gb|GD945338.1|GD945338
EST:     CAAACACCGCCGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAG                         AACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
genomic: CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
EST: gi|193462284|gb|FK426811.1|FK426811
EST:     CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAG                         AACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
genomic: CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
EST: gi|192299906|gb|FG991780.1|FG991780
EST:     CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAG                         AACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
genomic: CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
EST: gi|208329473|gb|GE132997.1|GE132997
EST:     CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAG                         AACAAGGATAGTAAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATT
genomic: CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGAT-GT-AACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATT
EST: gi|193433292|gb|FK395286.1|FK395286
EST:     CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAG                         AACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
genomic: CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
EST: gi|18726869|gb|BM523802.1|BM523802
EST:     CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAG                         AACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
genomic: CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
EST: gi|208320597|gb|GE121660.1|GE121660
EST:     CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAG                         AACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
genomic: CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
EST: gi|208293914|gb|GE090765.1|GE090765
EST:     CGAAATGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAG                         AACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
genomic: CGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
EST: gi|208316620|gb|GE115332.1|GE115332
EST:     CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAG                         AACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
genomic: CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
EST: gi|208251065|gb|GE050118.1|GE050118
EST:     CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAG                         AACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT
genomic: CAAACACCGCTGCCGAAGTGGCCTTGCGGCTTGTAAGGCCTGGAAGGAAGgtaattatat ... ttcctgacagAACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taactacacaagtggccgtgcatattcttatgcttttttcttcttttcctgacagAACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGTAAAATTGTTGAGGGTGTTCTTAGCCACCAAATGAAACAGTTTGTGATTG
 atgtaac  putative branch site (score: 3)
                    catattcttatgcttt  putative PPT
                                 ttttttcttctttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ttgtatgttgaaaggctagatttgtaatttattgttacagttatgtaactacacaagtggccgtgcatattcttatgcttttttcttcttttcctgacagAACAAGGATGTAACTGAAGCAATTCAGAAGATTGCCGCAGCGTATGATTGTAAAATTGTTGAGGGTGTTCTTAGCCACCAAATGAAACAGTTTGTGATTG

-tgtatgt
- - - - - - - - - - - - - - - - - - - - - - - - ctacaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gccgtgc