1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...atgagtgtgctatgaaaatattattgtattcttcaacatgatgctttcattgtggtatggcttaggttaagtctgatcaaattttgttccttgtgagcagGCATATGAGAAGAAAACTACTCCAAAATGGCGTTATGACCTTGGTCGTCGAAAAAATTTTGAGCAG
species | Glycine max |
transcript | GLYMA03G02930.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: T-CTCATCATGCACATATCTTTGGTGGCTGCTA-TACGACCACTATTGAG -CATATGAGAAGAAA-CTACTCEST: gi|15287842|gb|BI471733.1|BI471733
genomic: TTCTCATCATGCACATATCTTTGGTGGCTGCTAATACGACCACTATTGAGgtaaacttct ... ttgtgagcagGCATATGAGAAGAAAACTACTC
EST: TTCTCATCATGCACATATCTTTGGTGGCTGCTAATACGACCACTATTGAG GCATATGAGAAGAAAACTACTCCAAAATGGCGTTATGACCTTGGTCGTCGAEST: gi|151408618|gb|EV278426.1|EV278426
genomic: TTCTCATCATGCACATATCTTTGGTGGCTGCTAATACGACCACTATTGAGgtaaacttct ... ttgtgagcagGCATATGAGAAGAAAACTACTCCAAAATGGCGTTATGACCTTGGTCGTCGA
EST: TTCTCATCATGCACATATCTTTGGTGGCTGCTAATACGACCACTATTGAG GCATATGAGAAGAAAACTACTCCAAAATGGCGTTATGACCTTGGTCGTCGA
genomic: TTCTCATCATGCACATATCTTTGGTGGCTGCTAATACGACCACTATTGAGgtaaacttct ... ttgtgagcagGCATATGAGAAGAAAACTACTCCAAAATGGCGTTATGACCTTGGTCGTCGA
ttcattgtggtatggcttaggttaagtctgatcaaattttgttccttgtgagcagGCATATGAGAAGAAAACTACTCCAAAATGGCGTTATGACCTTGGTCGTCGAAAAAATTTTGAGCAG
gtctgat putative branch site (score: 4)
ttttgttcctt putative PPT
atcaaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgagtgtgctatgaaaatattattgtattcttcaacatgatgctttcattgtggtatggcttaggttaagtctgatcaaattttgttccttgtgagcagGCATATGAGAAGAAAACTACTCCAAAATGGCGTTATGACCTTGGTCGTCGAAAAAATTTTGAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- gagtgtg
- - - - -ctatgaa
- - - - - - - - - - - - tgtattc
- - - - - - - - - - - - - - - - - - - tgatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - tggtatg