1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtttaatgcaccttcatcatgaaagttatcattgttgttgtaattgttattgttatcatttatcatgagttcttgactctttcttctttccgttttacctaggcatgtgctacttgtcaggatatatcagctatcatcttttgtttgtttgttcgaattagtttctaattacgttatgtatattatgctgtagCACTCCACAAGTAAACACCTGGTCATCAGATTGGGTTCAATTTTATGGAGAGCATAGATTGGGTTACCAGTTGAAGTTGGCATTAGACCAGTATGGTGAC
species | Glycine max |
transcript | GLYMA03G01960.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GGAAAATCTAGTAAAGGCTTTGGTTTCGATGCTGATAACACCATTGGCAG CACTCCACAAGTAAACACCTGGTCATCAGATTGGGTTCAATTTTATGGAGAEST: gi|192313607|gb|FK007283.1|FK007283
genomic: GGAAAATCTAGTAAAGGCTTTGGTTTCGATGTTGATAACACCATTGGCAGgtttaatgca ... tatgctgtagCACTCCACAAGTAAACACCTGGTCATCAGATTGGGTTCAATTTTATGGAGA
EST: GGAAAATCTAGTAAAGGCTTTGGTTTCGATGTTGATAACACCATTGGCAG CACTCCACAAGTAAACACCTGGTCATCAGATTGGGTTCAATTTTATGGAGAEST: gi|120496587|gb|EH224754.1|EH224754
genomic: GGAAAATCTAGTAAAGGCTTTGGTTTCGATGTTGATAACACCATTGGCAGgtttaatgca ... tatgctgtagCACTCCACAAGTAAACACCTGGTCATCAGATTGGGTTCAATTTTATGGAGA
EST: GGGAAATCTAGTAAAGGCTTTGGTTTCGATGTTGATAACACCATTGGCAG CACTCCACAAGTAAACACCTGGTCATCAGATTGGGTTCAATTTTATGGAGAEST: gi|192318364|gb|FK007282.1|FK007282
genomic: GGAAAATCTAGTAAAGGCTTTGGTTTCGATGTTGATAACACCATTGGCAGgtttaatgca ... tatgctgtagCACTCCACAAGTAAACACCTGGTCATCAGATTGGGTTCAATTTTATGGAGA
EST: GGAAAATCTAGTAAAGGCTTTGGTTTCGATGTTGATAACACCATTGGCAG CACTCCACAAGTAAACACCTGGTCATCAGATTGGGTTCAATTTTATGGAGAEST: gi|120496729|gb|EH224896.1|EH224896
genomic: GGAAAATCTAGTAAAGGCTTTGGTTTCGATGTTGATAACACCATTGGCAGgtttaatgca ... tatgctgtagCACTCCACAAGTAAACACCTGGTCATCAGATTGGGTTCAATTTTATGGAGA
EST: GGAAAATCTAGTAAAGGCTTTGGTTTCGATGTTGATAACACCATTGGCAG CACTCCACAAGTAAACACCTGGTCATCAGATTGGGTTCAATTTTATGGAGAEST: gi|6133930|gb|AW132323.1|AW132323
genomic: GGAAAATCTAGTAAAGGCTTTGGTTTCGATGTTGATAACACCATTGGCAGgtttaatgca ... tatgctgtagCACTCCACAAGTAAACACCTGGTCATCAGATTGGGTTCAATTTTATGGAGA
EST: GGAAAATCTAGTAAAGGCTGTGGTTTCGATGTTGATAACACCATTGGCAG CACTCCACATGTAAACACCTTGTCATCAGATTGCGT-CAATTTTATGGAGA
genomic: GGAAAATCTAGTAAAGGCTTTGGTTTCGATGTTGATAACACCATTGGCAGgtttaatgca ... tatgctgtagCACTCCACAAGTAAACACCTGGTCATCAGATTGGGTTCAATTTTATGGAGA
ttttgtttgtttgttcgaattagtttctaattacgttatgtatattatgctgtagCACTCCACAAGTAAACACCTGGTCATCAGATTGGGTTCAATTTTATGGAGAGCATAGATTGGGTTACCAGTTGAAGTTGGCATTAGACCAGTATGGTGAC
ttctaat putative branch site (score: 2)
taattacgttatgtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttaatgcaccttcatcatgaaagttatcattgttgttgtaattgttattgttatcatttatcatgagttcttgactctttcttctttccgttttacctaggcatgtgctacttgtcaggatatatcagctatcatcttttgtttgtttgttcgaattagtttctaattacgttatgtatattatgctgtagCACTCCACAAGTAAACACCTGGTCATCAGATTGGGTTCAATTTTATGGAGAGCATAGATTGGGTTACCAGTTGAAGTTGGCATTAGACCAGTATGGTGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG