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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttagtttatattttagttctagcaagtttttaattttttttttcttgtgaagggaaaaggggtgagaatttgggtttttgatttgacccttttaaaatacggtgcttaatatcagATGCATGCTGAACTTCAAGTTCTTTCGCCTTTGGTGCCGGTTCGTGAGGTGAATTTCCTACGGTTTTGCAAGCAGCACGCAGAAGGGTTGTGGGCTGTGG

Basic information

species Glycine max
transcript GLYMA03G01860.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G01860.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv15s0048g02000.t01 (Vitis vinifera), 3'ss of exon 5
gtaagtttagtttatattttagttctagcaagtttttaattttttttttcttgtgaagggaaaaggggtgagaatttgggtttttgatttgacccttttaaaatacggtgcttaatatcagATGCATGCTGAACTTCAAGTTCTTTCGCCTTTGGTGCCGGTTCGTGAGGTGAATTTCCTACGGTTTTGCAAGCAGCACGCAGAAGGGTTGTGGGCTGTGG
|||||| |   ||  |      | | || |    ||| | | |||  ||             | ||  |   ||     || |||||    |   ||| ||| ||   |  ||  | |||||||||||||||||| ||||| ||||| |||||||| || ||||| ||||| || ||||| || || |||||||||||||| || ||  ||||||||||||
gtaagtgtttcttcaacaaccatacgagtagtcctttcaatgtttccttt------------agggttttcaaacaactgtctttgaagcaa--atttaaaattaattttttttctctcagATGCATGCTGAACTCCAAGTCCTTTCACCTTTGGTTCCTGTTCGCGAGGTAAACTTCCTCCGCTTCTGCAAGCAGCACGCCGAGGGCGTGTGGGCTGTGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggtgagaatttgggtttttgatttgacccttttaaaatacggtgcttaatatcagATGCATGCTGAACTTCAAGTTCTTTCGCCTTTGGTGCCGGTTCGTGAGGTGAATTTCCTACGGTTTTGCAAGCAGCACGCAGAAGGGTTGTGGGCTGTGG
                                           gcttaat  putative branch site (score: 4)
                             ttttaaaata  TA-rich tract