1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatgtcattaaggacatgcggttcttttgttcatcattaagaggaagtttctttcatggaattctgtgttactaatttgtttgcttcttgtcgctgaagGTTGCCAGAGCTATATTAGAAAACCCTAATGACAGGACCAAAGTACATCTTATCTATGCCAATGTTACGTATGAGGACATTCTTTTGAAG
species | Glycine max |
transcript | GLYMA03G00920.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GGGCTTTTGGGATGCTTGCTGGAGGGTCTGGAATCACCCCAATGTTCCAA GTTGCCAGAGCTATATTAGAAAACCCTAATGACAGGACCAAAGTACATCTTEST: gi|213617616|gb|DB969328.1|DB969328
genomic: GGGCTTTTGGGATGCTTGCTGGAGGGTCTGGAATCACCCCAATGTTCCAAgtatgtcatt ... gtcgctgaagGTTGCCAGAGCTATATTAGAAAACCCTAATGACAGGACCAAAGTACATCTT
EST: GGGCTTTTGGGATGCTTGCTGGAGGGTCTGGAATCACCCCAATGTTCCAA GTTGCCAGAGCTATATNAGAAAACCCTAATGACAGGACCAAAGTACATCTTEST: gi|209728695|gb|BW655402.1|BW655402
genomic: GGGCTTTTGGGATGCTTGCTGGAGGGTCTGGAATCACCCCAATGTTCCAAgtatgtcatt ... gtcgctgaagGTTGCCAGAGCTATATTAGAAAACCCTAATGACAGGACCAAAGTACATCTT
EST: GGGCTTTTGGGATGCTTGCTGGAGGGTCTGGAATCACCCCAATGTTCCAA GTTGCCAGAGCTATATTAGAAAACCCTAATGACAGGACCAAAGTACATCTTEST: gi|208315309|gb|GE113133.1|GE113133
genomic: GGGCTTTTGGGATGCTTGCTGGAGGGTCTGGAATCACCCCAATGTTCCAAgtatgtcatt ... gtcgctgaagGTTGCCAGAGCTATATTAGAAAACCCTAATGACAGGACCAAAGTACATCTT
EST: GGTCTTTTGGGATGCTTGCTGGAGGGTCTGGAATCACCCCAATGTTCCAA GTTGCCAGAGCTATATTAGAAAACCCTAATGACAGGACCAAAGTACATCTTEST: gi|151407227|gb|EV277042.1|EV277042
genomic: GG-CTTTTGGGATGCTTGCTGGAGGGTCTGGAATCACCCCAATGTTCCAAgtatgtcatt ... gtcgctgaagGTTGCCAGAGCTATATTAGAAAACCCTAATGACAGGACCAAAGTACATCTT
EST: GGGCTTTTGGGATGCTTGCTGGAGGGTCTGGAATCACCCCAATGTTCCAA GTTGCCAGAGCTATATTAGAAAACCCTAATGACAGGACCAAAGTACATCTTEST: gi|151394787|gb|EV264658.1|EV264658
genomic: GGGCTTTTGGGATGCTTGCTGGAGGGTCTGGAATCACCCCAATGTTCCAAgtatgtcatt ... gtcgctgaagGTTGCCAGAGCTATATTAGAAAACCCTAATGACAGGACCAAAGTACATCTT
EST: GGGCTTTTGGGATGCTTGCTGGAGGGTCTGGAATCACCCCAATGTTCCAA GTTGCCAGAGCTATATTAGAAAACCCTAATGACAGGACCAAAGTACACCTTEST: gi|13251953|gb|BG362856.1|BG362856
genomic: GGGCTTTTGGGATGCTTGCTGGAGGGTCTGGAATCACCCCAATGTTCCAAgtatgtcatt ... gtcgctgaagGTTGCCAGAGCTATATTAGAAAACCCTAATGACAGGACCAAAGTACATCTT
EST: GGGCTTTTGGGATGCTTGCTGGAGGGTCTGGAATCACCCCAATGTTCCAA GTTGCCAGAGCTATATTAGAAAACCCTAATGACAGGACCAAAGTACATCTTEST: gi|58021619|gb|CX708360.1|CX708360
genomic: GGGCTTTTGGGATGCTTGCTGGAGGGTCTGGAATCACCCCAATGTTCCAAgtatgtcatt ... gtcgctgaagGTTGCCAGAGCTATATTAGAAAACCCTAATGACAGGACCAAAGTACATCTT
EST: GGGCTTTTGGGATGCTTGCTGGAGGGTCTGGAATCACCCCAATGTTCCAA GTTGCCAGAGCTATATTAGAAAACCCTAATGACAGGACCAAAGTACATCTTEST: gi|298183643|gb|HO028856.1|HO028856
genomic: GGGCTTTTGGGATGCTTGCTGGAGGGTCTGGAATCACCCCAATGTTCCAAgtatgtcatt ... gtcgctgaagGTTGCCAGAGCTATATTAGAAAACCCTAATGACAGGACCAAAGTACATCTT
EST: GGGCTTTTGGGATGCTTGCTGGAGGGTCTGGAATCACCCCAATGTTCCAA GTTGCCAGAGCTATATTAGAAAACCCTAATGACAGGACCAAAGTACATCTTEST: gi|193364463|gb|FK333504.1|FK333504
genomic: GGGCTTTTGGGATGCTTGCTGGAGGGTCTGGAATCACCCCAATGTTCCAAgtatgtcatt ... gtcgctgaagGTTGCCAGAGCTATATTAGAAAACCCTAATGACAGGACCAAAGTACATCTT
EST: CCAATGTTCCAA GTTGCCAGAGCTATATTAGAAAACCCTAATGACAGGACCAAAGTACATCTTEST: gi|151401464|gb|EV271278.1|EV271278
genomic: CCAATGTTCCAAgtatgtcatt ... gtcgctgaagGTTGCCAGAGCTATATTAGAAAACCCTAATGACAGGACCAAAGTACATCTT
EST: GGGCTTTTGGGATGCTTGCTGGAGGGTCTGGAATCACCCCAATGTTCCAA GTTGCCAGAGCTATATTAGAAA-CCCTAATGACAGGACCAAAGTACATCTTEST: gi|298184687|gb|HO029900.1|HO029900
genomic: GGGCTTTTGGGATGCTTGCTGGAGGGTCTGGAATCACCCCAATGTTCCAAgtatgtcatt ... gtcgctgaagGTTGCCAGAGCTATATTAGAAAACCCTAATGACAGGACCAAAGTACATCTT
EST: GGGCTTTTGGGATGCTTGCTGGAGGGTCTGGAATCACCCCAATGTTCCAA GTTGCCAGAGCTATATTAGAAAACCCTAATGACAGGACCAAAGTACATCTTEST: gi|298174935|gb|HO014852.1|HO014852
genomic: GGGCTTTTGGGATGCTTGCTGGAGGGTCTGGAATCACCCCAATGTTCCAAgtatgtcatt ... gtcgctgaagGTTGCCAGAGCTATATTAGAAAACCCTAATGACAGGACCAAAGTACATCTT
EST: GGGCTTTTGGGATGCTTGCTGGAGGGTCTGGAATCACCCCAATGTTCCAA GTTGCCAGAGCTATATTEST: gi|193434756|gb|FK403736.1|FK403736
genomic: GGGCTTTTGGGATGCTTGCTGGAGGGTCTGGAATCACCCCAATGTTCCAAgtatgtcatt ... gtcgctgaagGTTGCCAGAGCTATATT
EST: CCAATGTTCCAA GTTTGCCAGAGCTATATTAGAAAACCCTAATGACAGGACCAAAGTACATCTEST: gi|151403993|gb|EV273803.1|EV273803
genomic: CCAATGTTCCAAgtatgtcatt ... gtcgctgaagG-TTGCCAGAGCTATATTAGAAAACCCTAATGACAGGACCAAAGTACATCT
EST: GGGCTTTTGGGATGCTTGCTGGAGGGTCTGGAATCACCCCAATGTTCCAA GTTGCCAGAGCTATATTAGAAAACCCTAATGACAGGACCAAAGTACATCTTEST: gi|12688305|gb|BG154641.1|BG154641
genomic: GGGCTTTTGGGATGCTTGCTGGAGGGTCTGGAATCACCCCAATGTTCCAAgtatgtcatt ... gtcgctgaagGTTGCCAGAGCTATATTAGAAAACCCTAATGACAGGACCAAAGTACATCTT
EST: GGGCTTTTGGGAT-CTTGCTGGAGGGTCTGGAATCACCCCAATGTTCCAA GTTGCCAGAGCTATATTAGAAAACCCTAATGACAGGACCAAAGTACATCTTEST: gi|37995436|gb|CF807025.1|CF807025
genomic: GGGCTTTTGGGATGCTTGCTGGAGGGTCTGGAATCACCCCAATGTTCCAAgtatgtcatt ... gtcgctgaagGTTGCCAGAGCTATATTAGAAAACCCTAATGACAGGACCAAAGTACATCTT
EST: GGGCTTTTGGGATGCTTGCTGGAGGGTCTGGAATCACCCCAATGTTCCAA GTTGCCAGAGCTATATTAGAAAACCCTAATGACAGGACCAAAGTACATCTTEST: gi|18690778|gb|BM519626.1|BM519626
genomic: GGGCTTTTGGGATGCTTGCTGGAGGGTCTGGAATCACCCCAATGTTCCAAgtatgtcatt ... gtcgctgaagGTTGCCAGAGCTATATTAGAAAACCCTAATGACAGGACCAAAGTACATCTT
EST: GGGCTTTTGGGATGCTTGCTGGAAGGTCTGGAATCACCCCAATGTTCCAA GTTGCCAGAGCTATATTAGAAAACCCTAATGACAGGACCAAAGTACATCTTEST: gi|207830162|gb|GD804570.1|GD804570
genomic: GGGCTTTTGGGATGCTTGCTGGAGGGTCTGGAATCACCCCAATGTTCCAAgtatgtcatt ... gtcgctgaagGTTGCCAGAGCTATATTAGAAAACCCTAATGACAGGACCAAAGTACATCTT
EST: GGGCTTTTGGGATGCTTGCTGGAGGGTCTGGAATCGCCCCAATGTTCCAA GTTGCCAGAGCTATATTAGAAAACCCTAATGACAGGACCAAAGTACATCTTEST: gi|151399348|gb|EV269219.1|EV269219
genomic: GGGCTTTTGGGATGCTTGCTGGAGGGTCTGGAATCACCCCAATGTTCCAAgtatgtcatt ... gtcgctgaagGTTGCCAGAGCTATATTAGAAAACCCTAATGACAGGACCAAAGTACATCTT
EST: GGGCTTTTGGGATGCTTGCTGGAGGGTCTGGAATCACCCCAATGTTCCAA GTTGCCAGAGCTATATTAGAAAACCCTAATGACAGGACCAAAGTACATCTT
genomic: GGGCTTTTGGGATGCTTGCTGGAGGGTCTGGAATCACCCCAATGTTCCAAgtatgtcatt ... gtcgctgaagGTTGCCAGAGCTATATTAGAAAACCCTAATGACAGGACCAAAGTACATCTT
aagtttctttcatggaattctgtgttactaatttgtttgcttcttgtcgctgaagGTTGCCAGAGCTATATTAGAAAACCCTAATGACAGGACCAAAGTACATCTTATCTATGCCAATGTTACGTATGAGGACATTCTTTTGAAG
tactaat putative branch site (score: 1)
cttcttgtc putative PPT
ttactaatttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtcattaaggacatgcggttcttttgttcatcattaagaggaagtttctttcatggaattctgtgttactaatttgtttgcttcttgtcgctgaagGTTGCCAGAGCTATATTAGAAAACCCTAATGACAGGACCAAAGTACATCTTATCTATGCCAATGTTACGTATGAGGACATTCTTTTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG