1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ttgtgctgtattttgccttttgctgtatggtatatttactgggttgactcctaccttttcttcgtatttgccttgtccttaacacgtgtaatttttatagGTTGTGACTAGTTTGGCTGATCCTTCTGCTAATATTATATTTGGGGCTGTCGTTGATGATCGCTACACGGGGGAGATTCACGTGACTATCATTGCAACTG
species | Glycine max |
transcript | GLYMA02G46530.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTACTGGAGGAAAGGACATAACCCTGCAGGAAGTGAACAGGGTTTCTCAG GTTGTGACTAGTTTGGCTGATCCTTCTGCTAATATTATATTTGGGGCTGTCEST: gi|208083437|gb|GD880965.1|GD880965
genomic: TTACTGGAGGAAAGGACATAACCCTGCAGGAAGTGAACAGGGTTTCTCAGgtatttaaag ... atttttatagGTTGTGACTAGTTTGGCTGATCCTTCTGCTAATATTATATTTGGGGCTGTC
EST: TTACTGGAGGAAAGGACATAACCCTGCAGGAAGTGAACAGGGTTTCTCAG GTTGTGACTAGTTTGGCTGATCCTTCTGCTAATATTATATTTGGGGCTGTCEST: gi|208134341|gb|GD931392.1|GD931392
genomic: TTACTGGAGGAAAGGACATAACCCTGCAGGAAGTGAACAGGGTTTCTCAGgtatttaaag ... atttttatagGTTGTGACTAGTTTGGCTGATCCTTCTGCTAATATTATATTTGGGGCTGTC
EST: TTACTGGAGGAAAGGACATAACCCTGCAGGAAGTGAACAGGGTTTCTCAG GTTGTGACTAGTTTGGCTGATCCTTCTAGACTAAAATATTATATTTGGGGEST: gi|208189254|gb|GD985632.1|GD985632
genomic: TTACTGGAGGAAAGGACATAACCCTGCAGGAAGTGAACAGGGTTTCTCAGgtatttaaag ... atttttatagGTTGTGACTAGTTTGGCTGATCCTTCT-G-CTAA--TATTATATTTGGGG
EST: TTACTGGAGGAAAGGACATAACCCTGCAGGAAGTGAACAGGGTTTCTCAG GTTGTGACTAGTTTGGCTGATCCTTCTGCTAATATTATATTTGGGG
genomic: TTACTGGAGGAAAGGACATAACCCTGCAGGAAGTGAACAGGGTTTCTCAGgtatttaaag ... atttttatagGTTGTGACTAGTTTGGCTGATCCTTCTGCTAATATTATATTTGGGG
gactcctaccttttcttcgtatttgccttgtccttaacacgtgtaatttttatagGTTGTGACTAGTTTGGCTGATCCTTCTGCTAATATTATATTTGGGGCTGTCGTTGATGATCGCTACACGGGGGAGATTCACGTGACTATCATTGCAACTG
ccttaac putative branch site (score: 3)
tttttat putative PPT
tgtaatttttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgtgctgtattttgccttttgctgtatggtatatttactgggttgactcctaccttttcttcgtatttgccttgtccttaacacgtgtaatttttatagGTTGTGACTAGTTTGGCTGATCCTTCTGCTAATATTATATTTGGGGCTGTCGTTGATGATCGCTACACGGGGGAGATTCACGTGACTATCATTGCAACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- -tgctgta
- - - - - ttttgcc
- - - - - - - - - - - - - - - - - - - -tgggttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccttaac