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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataattttaataacaagattgatctttctttttgctcaaggcctctttcttctatgcttacctttttcatttcaatttgagtattaccactgactttttttccccttctgaattatgtgaatttggtagATATGATATAATAGTAGATGCAACAGATAATGCTCCTACCCGGTACTTGATCAGTGATTGCTGTGTGGTCCTTGGAAAG

Basic information

species Glycine max
transcript GLYMA02G46300.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G46300.1 (Glycine max), 3'ss of exon 5
lower sequence: AT5G55130.1 (Arabidopsis thaliana), 3'ss of exon 5
gtataattttaataacaagattgatctttctttttgctcaaggcctctttcttctatgcttacctttttcatttcaatttgagtattaccactgactttttttccccttctgaattatgtgaatttggtagATATGATATAATAGTAGATGCAACAGATAATGCTCCTACCCGGTACTTGATCAGTGATTGCTGTGTGGTCCTTGGAAAG
   ||   |||   |    |      |||    |  ||||       |||  | |||  |||    | ||  |  || |  || |||   |  | || | |||||       || | | | ||||    ||||||||||| ||||| ||||| || |||||| |||| | ||| ||| ||||||||||||| |||||  |  | ||||||
--gtatccttagatatgcaaacatgttttaggatgtctcag------ttttctgtatctttattagtctc-ctcaaagtaaagcattgaaa--ggctgtgtttccgt-----aactgtataaatt----agATATGATATCATAGTCGATGCGACTGATAATCCTCCAAGCCGTTACATGATCAGTGATTGTTGTGTCTTGTTAGGAAAG

upper sequence: GLYMA02G46300.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv19s0090g01020.t01 (Vitis vinifera), 3'ss of exon 5
gtataattttaataacaagatt----gatctttctttttgctcaaggcctctttcttctatgcttacctttttcatttcaatttgagtattaccactgactttttttccccttctgaattatgtgaatttggtagATATGATATAATAGTAGATGCAACAGATAATGCTCCTACCCGGTACTTGATCAGTGATTGCTGTGTGGTCCTTGGAAAG
||||  |||  | |||||  ||    |||| ||   |||| ||        || ||| | |  || | || || | | |  | || | | |||   |||  | ||||    | |   | ||     ||||  |||||||||| || |  | ||||||||||||||||  |||| ||||||| |||| ||||||||||| || ||  | || |||
gtatcctttataaaacaaatttcaaagatcattaaatttg-tctttttgctttccttttcttttttctttatttaatcctttctgtg-aatactgatgaaatattttgatttccctgactactgacatttcttagATATGATCTAGTTATCGATGCAACAGATAATGTCCCTAGCCGGTACATGATAAGTGATTGCTGCGTTGTATTAGGGAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151398595|gb|EV268466.1|EV268466
EST:     GAACATGAAGAAGCTCTGCGGACTTCCAACGCTTTGGAACTTCTCGGCAA                         ATATGATATAATAGTAGATGCAACAGATGATGCTCCTACCCGGTACTTGAT
genomic: GAACATGAAGAAGCTCTGCGGACTTCCAACGCTTTGGAACTTCTCAGCAAgtataatttt ... aatttggtagATATGATATAATAGTAGATGCAACAGATAATGCTCCTACCCGGTACTTGAT
EST: gi|207734410|gb|GD712430.1|GD712430
EST:     GAACATGAAGAAGCTCTGCGGACTTCCAACGCTTTGGAACTTCTCAGCAA                         ATATGATATAATAGTAGATGCAACAGATAATG
genomic: GAACATGAAGAAGCTCTGCGGACTTCCAACGCTTTGGAACTTCTCAGCAAgtataatttt ... aatttggtagATATGATATAATAGTAGATGCAACAGATAATG
EST: gi|207699690|gb|GD678947.1|GD678947
EST:     GAACATGAAGAAGCTCTGCGGACTTCCAACGCTTTGGAACTTCTCAGCAA                         ATATGATATAATAGTAGATGCAACAGATAATGCTCCTACCCGGTACTTGAT
genomic: GAACATGAAGAAGCTCTGCGGACTTCCAACGCTTTGGAACTTCTCAGCAAgtataatttt ... aatttggtagATATGATATAATAGTAGATGCAACAGATAATGCTCCTACCCGGTACTTGAT
EST: gi|193409684|gb|FK372022.1|FK372022
EST:     GAACATGAAGAAGCTCTGCGGACTTCCAACGCTTTGGAACTTCTCAGCAA                         ATATGATATAATAGTAGATGCAACAGATAATGCTCCTACCCGGTACTTGAT
genomic: GAACATGAAGAAGCTCTGCGGACTTCCAACGCTTTGGAACTTCTCAGCAAgtataatttt ... aatttggtagATATGATATAATAGTAGATGCAACAGATAATGCTCCTACCCGGTACTTGAT
EST: gi|9899477|gb|BE608445.1|BE608445
EST:     GAACATGAAGAAGCTCTGCGGACTTCCAACGCTTTGGAACTTCTCAGCAA                         ATATGATATAATAGTAGATGCAACAGATAATGCTCCTACCCGGTACTTGAT
genomic: GAACATGAAGAAGCTCTGCGGACTTCCAACGCTTTGGAACTTCTCAGCAAgtataatttt ... aatttggtagATATGATATAATAGTAGATGCAACAGATAATGCTCCTACCCGGTACTTGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttgagtattaccactgactttttttccccttctgaattatgtgaatttggtagATATGATATAATAGTAGATGCAACAGATAATGCTCCTACCCGGTACTTGATCAGTGATTGCTGTGTGGTCCTTGGAAAG
             cactgac  putative branch site (score: 2)
                                    aattatgtgaattt  TA-rich tract