1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtactggatactgaattataccactaataggtcatgttgatgattccgttgtttaattctacaaatctgattgcaatttggtgattttgcagGCTTATTATTTGGCTCTGCCCTTCCCAATTGAGAAGGCCCCCACTAAGAGAATTGCAAGTGTAAATGGTGGGGTGAAGATATCTGAACTGTTGAAGTATC
species | Glycine max |
transcript | GLYMA02G46230.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GTTACAACAGCTTGGGTGCTTTTGCAACTATCAACCATCTTCACTTCCAG GCTTATTATTTGGCTCTGCCCTTCCCAATTGAGAEST: gi|298182882|gb|HO031617.1|HO031617
genomic: GTTACAACAGCTTGGGTGCTTTTGCAACTATCAACCATCTTCACTTCCAGgtactggata ... gattttgcagGCTTATTATTTGGCTCTGCCCTTCCCAATTGAGA
EST: GTTACAACAGCTTGGGTGCTTTTGCAACTATCAACCATCTTCACTTCCAG GCTTATTATTTGGCTCTGCCCTTCCCAATTGAGAAGGCCCCCACTAAGAGAEST: gi|12771995|gb|BG236922.1|BG236922
genomic: GTTACAACAGCTTGGGTGCTTTTGCAACTATCAACCATCTTCACTTCCAGgtactggata ... gattttgcagGCTTATTATTTGGCTCTGCCCTTCCCAATTGAGAAGGCCCCCACTAAGAGA
EST: GTTACAACAGCTTGGGTGCTTTTGCAACTATCAACCATCTTCACTTCCAG GCTTATTATTTGGCTCTGCCCTTCCCAATTGAGAAGGCCCCCACTAAGAGAEST: gi|192297939|gb|FG988381.1|FG988381
genomic: GTTACAACAGCTTGGGTGCTTTTGCAACTATCAACCATCTTCACTTCCAGgtactggata ... gattttgcagGCTTATTATTTGGCTCTGCCCTTCCCAATTGAGAAGGCCCCCACTAAGAGA
EST: GGTGCTTTTGCAACTATCAACCATCTTCACTTCCAG GCTTATTATTTGGCTCTGCCCTTCCCAATTGAGAAGGCCCCCACTAAGAGA
genomic: GGTGCTTTTGCAACTATCAACCATCTTCACTTCCAGgtactggata ... gattttgcagGCTTATTATTTGGCTCTGCCCTTCCCAATTGAGAAGGCCCCCACTAAGAGA
tgatgattccgttgtttaattctacaaatctgattgcaatttggtgattttgcagGCTTATTATTTGGCTCTGCCCTTCCCAATTGAGAAGGCCCCCACTAAGAGAATTGCAAGTGTAAATGGTGGGGTGAAGATATCTGAACTGTTGAAGTATC
atctgat putative branch site (score: 4)
tttaattctacaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactggatactgaattataccactaataggtcatgttgatgattccgttgtttaattctacaaatctgattgcaatttggtgattttgcagGCTTATTATTTGGCTCTGCCCTTCCCAATTGAGAAGGCCCCCACTAAGAGAATTGCAAGTGTAAATGGTGGGGTGAAGATATCTGAACTGTTGAAGTATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG