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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcgagtaatttaatatttttagttatttgattaactgatatattgaattttcataatagaaaagacaaaggttcaggaatacattgtttttctgattgattctgttaatgttcaactccacttattatgaacataacctctaaacattcaccttgctttaatgcagACAAATAATGTACGAGAGGAATTCAGTGAAGACATGTCCATACTCCGTGCACTTTCAATTGTTTTTGAAAGAAAACCAGAATTGAG

Basic information

species Glycine max
transcript GLYMA02G45140.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151411092|gb|EV280903.1|EV280903
EST:     AAGAATTGGTAACAAAAATTGGTAAAATATTTGGAGCGATTTTAGAAGAG                         ACAAATAATGTACGAGAGGAATTCAGTGAAGACATGTCCATACTCCGTGCA
genomic: AAGAATTGGTAACAAAAATTGGTAAAATATTTGGAGCGATTTTAGAAGAGgcgagtaatt ... tttaatgcagACAAATAATGTACGAGAGGAATTCAGTGAAGACATGTCCATACTCCGTGCA
EST: gi|19346933|gb|BM891821.1|BM891821
EST:     GATTTTAGAAGAG                         ACAAATAATGTACGAGA-GAGATTCAGTGAAGACATGTCCATACTCCGTGC
genomic: GATTTTAGAAGAGgcgagtaatt ... tttaatgcagACAAATAATGTACGAGAGGA-ATTCAGTGAAGACATGTCCATACTCCGTGC
EST: gi|23059794|gb|BU578393.1|BU578393
EST:     AAGAATTGGTAACAAAAATTGGTAAAATATTTGGAGCGATTTTAGAAGAG                         ACAAATAATGTACGAGAGGAATTCAGTGAAGACATGTCCATACTCCGTGCA
genomic: AAGAATTGGTAACAAAAATTGGTAAAATATTTGGAGCGATTTTAGAAGAGgcgagtaatt ... tttaatgcagACAAATAATGTACGAGAGGAATTCAGTGAAGACATGTCCATACTCCGTGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcaactccacttattatgaacataacctctaaacattcaccttgctttaatgcagACAAATAATGTACGAGAGGAATTCAGTGAAGACATGTCCATACTCCGTGCACTTTCAATTGTTTTTGAAAGAAAACCAGAATTGAG
                                       ccttgcttt  CT-rich tract
          ttattatgaacataa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gcgagtaatttaatatttttagttatttgattaactgatatattgaattttcataatagaaaagacaaaggttcaggaatacattgtttttctgattgattctgttaatgttcaactccacttattatgaacataacctctaaacattcaccttgctttaatgcagACAAATAATGTACGAGAGGAATTCAGTGAAGACATGTCCATACTCCGTGCACTTTCAATTGTTTTTGAAAGAAAACCAGAATTGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA